Detailed information NTG0096026

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: AABA19_RS10790
• Genome accession: NZ_AP028609
• Coordinates: 2102192..2103289 (+)
• Length: 365 a.a.
• NCBI ID: WP_000266662.1
• Uniprot ID: Q8DMX3
• Organism: Streptococcus pneumoniae strain Sep4
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2097192..2108289

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AABA19_RS10765 (TKY121806_20850)	pgsA	2097713..2098258 (-)	546	WP_000712132.1	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-
AABA19_RS10770 (TKY121806_20860)	rodZ	2098269..2099090 (-)	822	WP_001227958.1	cytoskeleton protein RodZ	-
AABA19_RS10775 (TKY121806_20870)	yfmH	2099132..2100415 (-)	1284	WP_000170194.1	EF-P 5-aminopentanol modification-associated protein YfmH	-
AABA19_RS10780 (TKY121806_20880)	yfmF	2100412..2101662 (-)	1251	WP_000424263.1	EF-P 5-aminopentanol modification-associated protein YfmF	-
AABA19_RS10785 (TKY121806_20890)	yaaA	2101821..2102189 (+)	369	WP_054386371.1	S4 domain-containing protein YaaA	-
AABA19_RS10790 (TKY121806_20900)	recF	2102192..2103289 (+)	1098	WP_000266662.1	DNA replication/repair protein RecF	Machinery gene
AABA19_RS10795 (TKY121806_20910)	guaB	2103340..2104818 (-)	1479	WP_000073428.1	IMP dehydrogenase	-
AABA19_RS10800 (TKY121806_20920)	trpS	2104970..2105995 (-)	1026	WP_000165444.1	tryptophan--tRNA ligase	-
AABA19_RS10805 (TKY121806_20930)	-	2106201..2107823 (+)	1623	WP_000958770.1	ATP-binding cassette domain-containing protein	-

Sequence

Protein

• Length: 365 a.a.
• Molecular weight: 41916.00 Da
• Isoelectric Point: 9.0596

>NTDB_id=96026 AABA19_RS10790 WP_000266662.1 2102192..2103289(+) (recF) [Streptococcus pneumoniae strain Sep4]
MWLQHLSLKTFRNYKETKIDFNPKLNVFLGRNAQGKTNMLEAIYFLALTRSHRTRTDKNLIHFDEEQLHLSGLVQKKTGS
IPLEIELTQKGRVTKVNHLKQARLSDYVGHMNVVLFAPEDLQLIKGAPSIRRKFIDMELGQIKPIYLSDLTNYNHILKQR
NTYLKSAQKIDETFLSVLDDQLVDYGCRVMNHRLDFIKKLESFGRKKHFELSNQIEELSISYQSSVNITDKQNLSESFKI
ALEKSRSRDLFKKNTGVGPHRDDISFYINGMDASFGSQGQHRSLVLSIKLAEIELMESITTESPILLLDDVMSELDNTRQ
LKLLETISQSIQTFITTTSLDHLQNLPENLSIFTIQDGKASVNGN

Nucleotide

• Length: 1098 bp

>NTDB_id=96026 AABA19_RS10790 WP_000266662.1 2102192..2103289(+) (recF) [Streptococcus pneumoniae strain Sep4]
ATGTGGCTACAACATCTATCTCTCAAGACTTTTCGTAATTACAAAGAAACGAAAATAGACTTTAATCCTAAATTGAATGT
CTTTTTGGGACGTAATGCACAAGGAAAAACAAACATGTTAGAGGCTATCTATTTTTTAGCCTTAACGCGTAGTCATCGAA
CTCGAACAGATAAAAATCTCATTCATTTTGATGAGGAACAACTTCATCTTTCAGGTCTCGTTCAGAAAAAAACTGGATCC
ATTCCCCTAGAAATCGAACTAACACAAAAAGGCCGTGTAACAAAAGTTAATCACTTAAAACAGGCACGCCTTTCAGATTA
TGTAGGACACATGAATGTTGTCTTATTTGCTCCTGAAGATTTACAACTAATTAAAGGAGCACCTTCGATTCGACGAAAAT
TCATTGATATGGAACTTGGGCAAATTAAGCCAATCTATTTATCTGACTTAACCAATTATAACCACATCCTAAAGCAAAGA
AACACTTACCTAAAATCAGCTCAAAAAATAGATGAAACATTCCTTTCTGTGTTAGATGATCAGCTAGTTGATTATGGATG
TCGTGTAATGAATCACCGCTTAGATTTCATAAAAAAACTAGAATCATTTGGGCGTAAGAAACATTTTGAACTCTCTAATC
AGATCGAAGAGTTGTCAATATCCTATCAATCTTCTGTCAATATAACTGACAAACAAAACTTATCCGAATCTTTCAAAATT
GCTTTAGAAAAAAGTAGATCCAGAGATTTATTTAAAAAGAATACTGGTGTCGGTCCTCATCGAGATGACATTTCTTTTTA
TATAAATGGGATGGATGCTAGTTTCGGAAGCCAAGGTCAACATCGTAGTCTCGTCCTCTCGATAAAATTAGCAGAAATCG
AATTAATGGAAAGCATTACCACAGAATCTCCTATATTACTGCTTGACGATGTGATGAGTGAACTTGACAACACTAGACAG
TTAAAATTATTAGAAACGATTTCTCAATCAATCCAAACCTTTATCACAACAACAAGCTTAGACCATCTTCAAAATCTGCC
AGAAAATCTAAGTATCTTCACTATTCAGGATGGTAAAGCTTCTGTAAATGGAAATTGA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (3-358)

3D structure

• AlphaFold DB: Q8DMX3

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Streptococcus pneumoniae R6	100	100	1
recF	Bacillus subtilis subsp. subtilis str. 168	45.902	100	0.46