Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   WKI54_RS02180 Genome accession   NZ_CP149648
Coordinates   408989..409633 (-) Length   214 a.a.
NCBI ID   WP_014418762.1    Uniprot ID   A0A2Z4EIP2
Organism   Bacillus velezensis strain MJ04     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 403989..414633
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WKI54_RS02145 (WKI54_02145) - 405176..405607 (+) 432 WP_007613424.1 Na(+)/H(+) antiporter subunit B -
  WKI54_RS02150 (WKI54_02150) - 405607..405948 (+) 342 WP_003152063.1 Na(+)/H(+) antiporter subunit C -
  WKI54_RS02155 (WKI54_02155) - 405941..407421 (+) 1481 Protein_403 Na+/H+ antiporter subunit D -
  WKI54_RS02160 (WKI54_02160) - 407427..407902 (+) 476 Protein_404 Na+/H+ antiporter subunit E -
  WKI54_RS02165 (WKI54_02165) - 407902..408186 (+) 285 WP_012118311.1 Na(+)/H(+) antiporter subunit F1 -
  WKI54_RS02170 (WKI54_02170) mnhG 408170..408544 (+) 375 WP_017419421.1 monovalent cation/H(+) antiporter subunit G -
  WKI54_RS02175 (WKI54_02175) - 408584..408967 (-) 384 WP_017419422.1 hotdog fold thioesterase -
  WKI54_RS02180 (WKI54_02180) comA 408989..409633 (-) 645 WP_014418762.1 response regulator transcription factor Regulator
  WKI54_RS02185 (WKI54_02185) comP 409714..412020 (-) 2307 WP_017419423.1 sensor histidine kinase Regulator
  WKI54_RS02190 (WKI54_02190) comX 412039..412215 (-) 177 WP_017419424.1 competence pheromone ComX -
  WKI54_RS02195 (WKI54_02195) - 412230..413126 (-) 897 WP_017419425.1 polyprenyl synthetase family protein -
  WKI54_RS02200 (WKI54_02200) degQ 413257..413397 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  WKI54_RS02205 (WKI54_02205) - 413862..414203 (+) 342 WP_110085235.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24302.70 Da        Isoelectric Point: 4.9953

>NTDB_id=960251 WKI54_RS02180 WP_014418762.1 408989..409633(-) (comA) [Bacillus velezensis strain MJ04]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTQRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=960251 WKI54_RS02180 WP_014418762.1 408989..409633(-) (comA) [Bacillus velezensis strain MJ04]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTCAGTCCTGATGCCAGTGAACAATTCGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATAGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGTAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCATGGCGCCATCAGTAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTCAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACACAGAGAGAGCGCCAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGCGGTCGATTGAATA
CAGCCTGACATCCATTTTTAATAAGCTGAATGTCGGCTCCCGCACTGAAGCGGTGCTGATCGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2Z4EIP2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

85.981

100

0.86