Detailed information NTG0960166

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: WDQ85_RS22620
• Genome accession: NZ_CP149641
• Coordinates: 4506394..4507194 (+)
• Length: 266 a.a.
• NCBI ID: WP_002888947.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain Kpn_XM13
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4501394..4512194

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
WDQ85_RS22585	gspH	4501550..4502065 (+)	516	WP_004151939.1	type II secretion system minor pseudopilin GspH	-
WDQ85_RS22590	gspI	4502062..4502427 (+)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
WDQ85_RS22595	gspJ	4502424..4503020 (+)	597	WP_004151940.1	type II secretion system minor pseudopilin GspJ	-
WDQ85_RS22600	gspK	4503017..4504003 (+)	987	WP_004151941.1	type II secretion system minor pseudopilin GspK	-
WDQ85_RS22605	gspL	4503990..4505183 (+)	1194	WP_004151942.1	type II secretion system protein GspL	-
WDQ85_RS22610	-	4505176..4505661 (+)	486	WP_004151943.1	type II secretion system protein M	-
WDQ85_RS22615	-	4505651..4506397 (+)	747	WP_004145897.1	type II secretion system protein N	-
WDQ85_RS22620	pilD	4506394..4507194 (+)	801	WP_002888947.1	A24 family peptidase	Machinery gene
WDQ85_RS22625	hrpB	4507242..4509671 (-)	2430	WP_004151944.1	ATP-dependent helicase HrpB	-
WDQ85_RS22630	thpR	4509744..4510280 (+)	537	WP_004145901.1	RNA 2',3'-cyclic phosphodiesterase	-
WDQ85_RS22635	sfsA	4510280..4510996 (+)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
WDQ85_RS22640	dksA	4511159..4511614 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29419.04 Da
• Isoelectric Point: 8.8894

>NTDB_id=960166 WDQ85_RS22620 WP_002888947.1 4506394..4507194(+) (pilD) [Klebsiella pneumoniae strain Kpn_XM13]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGSIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=960166 WDQ85_RS22620 WP_002888947.1 4506394..4507194(+) (pilD) [Klebsiella pneumoniae strain Kpn_XM13]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTACTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTAGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGA
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTGCTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGAGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425