Detailed information NTG0960118

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: WDP16_RS22610
• Genome accession: NZ_CP149630
• Coordinates: 4505194..4505994 (+)
• Length: 266 a.a.
• NCBI ID: WP_002888947.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain Kpn_XM11
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4500194..4510994

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
WDP16_RS22575	gspH	4500350..4500865 (+)	516	WP_004151939.1	type II secretion system minor pseudopilin GspH	-
WDP16_RS22580	gspI	4500862..4501227 (+)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
WDP16_RS22585	gspJ	4501224..4501820 (+)	597	WP_004151940.1	type II secretion system minor pseudopilin GspJ	-
WDP16_RS22590	gspK	4501817..4502803 (+)	987	WP_004151941.1	type II secretion system minor pseudopilin GspK	-
WDP16_RS22595	gspL	4502790..4503983 (+)	1194	WP_004151942.1	type II secretion system protein GspL	-
WDP16_RS22600	-	4503976..4504461 (+)	486	WP_004151943.1	type II secretion system protein M	-
WDP16_RS22605	-	4504451..4505197 (+)	747	WP_004145897.1	type II secretion system protein N	-
WDP16_RS22610	pilD	4505194..4505994 (+)	801	WP_002888947.1	A24 family peptidase	Machinery gene
WDP16_RS22615	hrpB	4506042..4508471 (-)	2430	WP_004151944.1	ATP-dependent helicase HrpB	-
WDP16_RS22620	thpR	4508544..4509080 (+)	537	WP_004145901.1	RNA 2',3'-cyclic phosphodiesterase	-
WDP16_RS22625	sfsA	4509080..4509796 (+)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
WDP16_RS22630	dksA	4509959..4510414 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29419.04 Da
• Isoelectric Point: 8.8894

>NTDB_id=960118 WDP16_RS22610 WP_002888947.1 4505194..4505994(+) (pilD) [Klebsiella pneumoniae strain Kpn_XM11]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGSIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=960118 WDP16_RS22610 WP_002888947.1 4505194..4505994(+) (pilD) [Klebsiella pneumoniae strain Kpn_XM11]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTACTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTAGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGA
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTGCTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGAGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425