Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   WIN67_RS26395 Genome accession   NZ_CP149586
Coordinates   5841024..5842352 (+) Length   442 a.a.
NCBI ID   WP_339071744.1    Uniprot ID   -
Organism   Pseudomonas idahonensis strain BIM B-1906     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5836024..5847352
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WIN67_RS26375 (WIN67_26375) pgeF 5837658..5838383 (-) 726 WP_339070251.1 peptidoglycan editing factor PgeF -
  WIN67_RS26380 (WIN67_26380) rluD 5838380..5839342 (-) 963 WP_339070252.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  WIN67_RS26385 (WIN67_26385) - 5839493..5840515 (+) 1023 WP_102882249.1 outer membrane protein assembly factor BamD -
  WIN67_RS26390 (WIN67_26390) - 5840640..5840873 (+) 234 WP_339070253.1 PP0621 family protein -
  WIN67_RS26395 (WIN67_26395) pilR 5841024..5842352 (+) 1329 WP_339071744.1 sigma-54 dependent transcriptional regulator Regulator
  WIN67_RS26400 (WIN67_26400) thiO 5842349..5843449 (-) 1101 WP_110652086.1 glycine oxidase ThiO -
  WIN67_RS26405 (WIN67_26405) - 5843506..5843907 (-) 402 WP_102882252.1 type IV pilin protein -
  WIN67_RS26410 (WIN67_26410) - 5843923..5844429 (-) 507 WP_339070254.1 hypothetical protein -
  WIN67_RS26415 (WIN67_26415) - 5844416..5844856 (-) 441 WP_213665054.1 PilX N-terminal domain-containing pilus assembly protein -
  WIN67_RS26420 (WIN67_26420) - 5844898..5845608 (-) 711 WP_339070255.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  WIN67_RS26425 (WIN67_26425) pilV 5845605..5846048 (-) 444 WP_339070256.1 type IV pilus modification protein PilV -
  WIN67_RS26430 (WIN67_26430) - 5846439..5846963 (+) 525 WP_102882256.1 GspH/FimT family protein -

Sequence

Protein


Download         Length: 442 a.a.        Molecular weight: 49664.32 Da        Isoelectric Point: 8.0115

>NTDB_id=960082 WIN67_RS26395 WP_339071744.1 5841024..5842352(+) (pilR) [Pseudomonas idahonensis strain BIM B-1906]
MNPMPRVLVVDEAMEVRALVEITLGRMRLHTQSARTLQEARTHLTRERFDLCLTDLHLPDGSGLDLLLHIRQCHPQLPVA
LLSNDPGTQASALEVGACDLLHKPLHPIRLREWISSRLKRLPTTTKNLPDHQLLGHSPPMDNLRQHIDKLAPSLAAVYIS
GESGSGKERVARLIHQLGPRARAPFIPVNCGAIPGELMESEFFGHRKGSFSGALADQPGLFQAAEGGTLFLDEVADLPLA
MQVKLLRALQERSVRPVGSQEERAVDVRILCATHKDLKCEVESGRFRQDLYYRLNVIELRVPALRERPGDIEILARHILQ
RLAKSGDKPATQLSPQALQALERYDFPGNVRELENLLERAQTLCEGPWIELSDLHLPVSEHQDAPSPSLPPNLDLALHLQ
QVERHLLLQALEESRWNRTVAARRLSLSLRSMRYRMKKLGLN

Nucleotide


Download         Length: 1329 bp        

>NTDB_id=960082 WIN67_RS26395 WP_339071744.1 5841024..5842352(+) (pilR) [Pseudomonas idahonensis strain BIM B-1906]
ATGAACCCAATGCCCAGGGTGCTGGTGGTCGATGAGGCCATGGAAGTCCGTGCCCTCGTGGAAATCACCCTCGGCCGCAT
GCGCCTGCACACCCAAAGTGCCCGCACCTTGCAGGAAGCCCGGACTCATCTGACCCGGGAGCGCTTCGACCTGTGCCTGA
CAGACCTGCATTTGCCGGATGGCAGCGGACTGGACCTGCTGCTGCATATTCGCCAATGCCACCCTCAATTGCCGGTCGCA
CTTCTAAGCAATGACCCAGGCACGCAGGCCAGCGCCCTGGAAGTCGGGGCTTGCGACCTGCTGCACAAGCCTCTACACCC
CATACGCCTTCGAGAATGGATAAGCAGCAGACTGAAGCGGCTGCCCACCACCACAAAAAACCTACCCGACCATCAGTTGT
TGGGGCACTCACCGCCCATGGACAACCTGCGCCAACACATCGACAAGTTGGCCCCCAGCCTGGCGGCGGTCTACATCAGC
GGCGAATCCGGCAGTGGCAAGGAGCGAGTGGCGCGTTTGATCCACCAGTTGGGTCCCAGGGCCAGGGCGCCCTTCATTCC
GGTCAACTGTGGTGCCATTCCTGGCGAACTGATGGAGAGTGAGTTTTTCGGTCACCGCAAAGGCAGCTTCAGTGGCGCCC
TTGCTGATCAGCCTGGACTGTTCCAGGCCGCTGAGGGGGGAACCCTGTTCCTCGACGAGGTCGCCGACCTGCCTCTAGCC
ATGCAGGTGAAGCTACTGCGTGCACTGCAGGAAAGGTCTGTGCGCCCGGTGGGCAGCCAGGAGGAAAGAGCCGTCGATGT
GCGGATTCTCTGTGCCACTCACAAGGATCTGAAGTGCGAGGTAGAGTCCGGCCGCTTTCGCCAGGATCTCTACTACCGCT
TGAATGTGATCGAACTGCGAGTCCCCGCGCTGCGCGAGCGCCCAGGAGATATCGAGATACTGGCGCGGCATATTCTGCAA
CGCCTGGCCAAATCCGGCGACAAGCCTGCCACCCAACTGAGCCCGCAAGCTCTGCAAGCCCTGGAGCGCTACGACTTTCC
CGGCAACGTACGTGAACTGGAAAACCTGCTGGAGCGGGCCCAGACCCTTTGCGAGGGTCCGTGGATCGAGCTGAGCGACC
TGCATCTGCCTGTCAGTGAACACCAGGACGCCCCCTCCCCCTCGCTCCCTCCCAACCTGGACCTCGCGCTGCACCTGCAA
CAGGTGGAGCGCCATTTACTGCTCCAGGCCCTGGAGGAAAGCCGCTGGAACCGCACGGTGGCGGCCCGACGGCTGAGTCT
GTCCTTGCGTTCGATGCGTTACCGCATGAAGAAGCTTGGCCTGAATTAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(399-439)

Sigma-54 interaction domain (Sigma54_activat)

(133-299)

Response regulator receiver domain (Response_reg)

(7-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

61.851

100

0.62
  pilR Acinetobacter baumannii strain A118

44.685

100

0.466