Detailed information NTG0960081

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: WIN67_RS26250
• Genome accession: NZ_CP149586
• Coordinates: 5813453..5814325 (+)
• Length: 290 a.a.
• NCBI ID: WP_339070240.1
• Uniprot ID: -
• Organism: Pseudomonas idahonensis strain BIM B-1906
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5808453..5819325

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
WIN67_RS26235 (WIN67_26235)	-	5810995..5811351 (-)	357	WP_102865479.1	BON domain-containing protein	-
WIN67_RS26240 (WIN67_26240)	-	5811591..5812007 (-)	417	WP_102882235.1	pilin	-
WIN67_RS26245 (WIN67_26245)	pilC	5812233..5813450 (+)	1218	WP_102882236.1	type II secretion system F family protein	Machinery gene
WIN67_RS26250 (WIN67_26250)	pilD	5813453..5814325 (+)	873	WP_339070240.1	A24 family peptidase	Machinery gene
WIN67_RS26255 (WIN67_26255)	coaE	5814322..5814945 (+)	624	WP_102865475.1	dephospho-CoA kinase	-
WIN67_RS26260 (WIN67_26260)	yacG	5814942..5815145 (+)	204	WP_267268931.1	DNA gyrase inhibitor YacG	-
WIN67_RS26265 (WIN67_26265)	-	5815165..5815380 (-)	216	WP_102865473.1	hypothetical protein	-
WIN67_RS26270 (WIN67_26270)	-	5815444..5816133 (-)	690	WP_102882238.1	energy-coupling factor ABC transporter permease	-
WIN67_RS26275 (WIN67_26275)	-	5816130..5816597 (-)	468	WP_102882239.1	FAD/FMN-containing dehydrogenase	-
WIN67_RS26280 (WIN67_26280)	-	5816743..5817372 (+)	630	WP_102882240.1	DUF1780 domain-containing protein	-
WIN67_RS26285 (WIN67_26285)	-	5817561..5817734 (+)	174	WP_043274580.1	DUF3094 family protein	-
WIN67_RS26290 (WIN67_26290)	-	5817795..5819093 (+)	1299	WP_102865469.1	NAD(P)/FAD-dependent oxidoreductase	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32097.29 Da
• Isoelectric Point: 7.0714

>NTDB_id=960081 WIN67_RS26250 WP_339070240.1 5813453..5814325(+) (pilD) [Pseudomonas idahonensis strain BIM B-1906]
MSLTEAMTLYPLAFVTAALVLGLLVGSFLNVLVWRLPKMLERDWRAQAHEVLGLPPEPVAAPYNLLLPHSQCPHCTQPIR
PWENIPLLSYLWLRGRCAHCRTAISPRYPLTELACGLISAYVAWHFGFGWPAGLLLILSWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANSFEVLASLEDALWGAVLGYLCLWSVFWLFKLLTGKDGMGHGDFKLLAMLGAWGGWQILPLTLLLSSLVG
AILGTVMLRLNRAKTSTPIPFGPFLAIAGWIALLWGGQMTDFYLQFVGFQ

Nucleotide

• Length: 873 bp

>NTDB_id=960081 WIN67_RS26250 WP_339070240.1 5813453..5814325(+) (pilD) [Pseudomonas idahonensis strain BIM B-1906]
ATGTCCTTGACTGAAGCCATGACCCTTTACCCCCTGGCCTTCGTGACTGCGGCCCTGGTACTGGGGCTGCTCGTAGGCAG
CTTTCTGAACGTGCTGGTGTGGCGCCTGCCGAAAATGCTTGAACGCGATTGGCGGGCTCAAGCCCACGAAGTGCTGGGAC
TGCCCCCGGAGCCTGTAGCGGCGCCCTACAACCTGCTGCTGCCCCACTCCCAATGCCCCCATTGCACACAACCGATCCGC
CCCTGGGAAAACATTCCCCTGCTCAGCTATCTGTGGCTGCGGGGCCGTTGCGCCCACTGCAGGACCGCCATCAGCCCGCG
CTACCCACTAACCGAACTGGCTTGCGGGCTGATCTCGGCGTACGTCGCCTGGCACTTCGGTTTTGGCTGGCCCGCAGGCC
TGCTGCTGATCCTCAGTTGGGGGTTACTGGCCATGAGCCTGATCGATGCCGATCACCAACTGCTGCCAGACGTGCTGGTG
TTGCCACTGCTGTGGCTGGGACTGATTGCCAATAGCTTCGAGGTACTGGCGAGCCTGGAGGATGCCCTGTGGGGCGCGGT
ACTCGGCTATCTGTGCCTGTGGTCAGTGTTCTGGCTGTTCAAATTGCTGACCGGCAAGGACGGCATGGGCCACGGCGACT
TCAAGCTGCTAGCGATGCTTGGCGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCTTGCTCCTGTCCTCGCTGGTGGGG
GCGATTCTCGGCACTGTCATGCTGCGCCTGAACCGGGCCAAGACCTCGACGCCCATCCCCTTCGGCCCCTTTCTGGCCAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATGACCGACTTCTATTTGCAGTTTGTCGGTTTCCAATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

• Type IV leader peptidase family (Peptidase_A24) (136-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	54.035	98.276	0.531
pilD	Vibrio campbellii strain DS40M4	49.291	97.241	0.479
pilD	Acinetobacter baumannii D1279779	49.27	94.483	0.466
pilD	Acinetobacter nosocomialis M2	49.27	94.483	0.466
pilD	Neisseria gonorrhoeae MS11	48.889	93.103	0.455