Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   WHL52_RS19165 Genome accession   NZ_CP149576
Coordinates   3639830..3640519 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus subtilis strain DSM 10     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3634830..3645519
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHL52_RS19130 flgN 3635010..3635492 (-) 483 WP_003227999.1 flagellar protein FlgN -
  WHL52_RS19135 flgM 3635508..3635774 (-) 267 WP_003227997.1 flagellar biosynthesis anti-sigma factor FlgM -
  WHL52_RS19140 yvyF 3635855..3636274 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  WHL52_RS19145 comFC 3636348..3637070 (-) 723 WP_003227991.1 comF operon protein ComFC Machinery gene
  WHL52_RS19150 comFB 3637034..3637330 (-) 297 WP_003227989.1 late competence protein ComFB -
  WHL52_RS19155 comFA 3637390..3638781 (-) 1392 WP_003243962.1 ATP-dependent helicase ComFA Machinery gene
  WHL52_RS19160 fakBA 3638887..3639732 (-) 846 WP_003244125.1 DegV family protein -
  WHL52_RS19165 degU 3639830..3640519 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  WHL52_RS19170 degS 3640602..3641759 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  WHL52_RS19175 yvyE 3641976..3642629 (+) 654 WP_003227979.1 YigZ family protein -
  WHL52_RS19180 tagV 3642629..3643804 (+) 1176 WP_003244117.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  WHL52_RS19185 tagO 3643877..3644953 (-) 1077 WP_003227975.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=960001 WHL52_RS19165 WP_003219701.1 3639830..3640519(-) (degU) [Bacillus subtilis strain DSM 10]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=960001 WHL52_RS19165 WP_003219701.1 3639830..3640519(-) (degU) [Bacillus subtilis strain DSM 10]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGGGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTCCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGTATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1