Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGB   Type   Machinery gene
Locus tag   WHL52_RS13410 Genome accession   NZ_CP149576
Coordinates   2553203..2554240 (-) Length   345 a.a.
NCBI ID   WP_009967727.1    Uniprot ID   A0AAE2SM96
Organism   Bacillus subtilis strain DSM 10     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2548203..2559240
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHL52_RS13360 tasA 2548301..2549086 (-) 786 WP_004398632.1 biofilm matrix protein TasA -
  WHL52_RS13365 sipW 2549150..2549722 (-) 573 WP_003246088.1 signal peptidase I -
  WHL52_RS13370 tapA 2549706..2550467 (-) 762 WP_004399106.1 amyloid fiber anchoring/assembly protein TapA -
  WHL52_RS13375 yqzG 2550739..2551065 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  WHL52_RS13380 spoIIT 2551107..2551286 (-) 180 WP_003230176.1 YqzE family protein -
  WHL52_RS13385 comGG 2551357..2551731 (-) 375 WP_003230170.1 ComG operon protein ComGG Machinery gene
  WHL52_RS13390 comGF 2551732..2552115 (-) 384 WP_003230168.1 ComG operon protein ComGF Machinery gene
  WHL52_RS13395 comGE 2552141..2552488 (-) 348 WP_003230165.1 ComG operon protein 5 Machinery gene
  WHL52_RS13400 comGD 2552472..2552903 (-) 432 WP_004398628.1 comG operon protein ComGD Machinery gene
  WHL52_RS13405 comGC 2552893..2553189 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene
  WHL52_RS13410 comGB 2553203..2554240 (-) 1038 WP_009967727.1 comG operon protein ComGB Machinery gene
  WHL52_RS13415 comGA 2554227..2555297 (-) 1071 WP_004399124.1 competence protein ComGA Machinery gene
  WHL52_RS13420 corA 2555709..2556662 (-) 954 WP_004399136.1 magnesium transporter CorA -
  WHL52_RS13425 yqhB 2556805..2558133 (+) 1329 WP_009967730.1 hemolysin family protein -
  WHL52_RS13430 rsbRD 2558186..2559022 (-) 837 WP_004398754.1 RsbT co-antagonist protein RsbRD -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 39762.26 Da        Isoelectric Point: 9.6257

>NTDB_id=959977 WHL52_RS13410 WP_009967727.1 2553203..2554240(-) (comGB) [Bacillus subtilis strain DSM 10]
MKKIRKVWLLKDQARLLKRLGEMTAGGYTLLDGLRLMELQMNKRQAADLTDSVTCLREGAPFYQVLKSLSFHKEAVGICY
FAETHGELPASMIQSGELLERKIAQADQLKRVLRYPLFLIFTVAVMFYMLQSIIIPQFSGIYQSMNMETSRSTDMLFAFF
QHIDLVIILLVLFTAGIGIYYWLVFKKKSPARQMLICIRIPLVGKLVKLFNSYFFSLQLSSLLKSGLSIYDSLNAFKHQT
FLPFYRCEAEQLIERLKAGESIESAICGSLFYETDLSKVISHGQLSGRLDRELFTYSQFILQRLEHKAQKWTGILQPMIY
GFVAAMILLVYLSMLVPMYQMMNQM

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=959977 WHL52_RS13410 WP_009967727.1 2553203..2554240(-) (comGB) [Bacillus subtilis strain DSM 10]
ATGAAAAAGATTAGAAAAGTCTGGTTGTTAAAGGATCAAGCCAGGTTATTAAAGAGGCTCGGTGAAATGACTGCGGGCGG
ATATACACTTCTGGATGGATTACGCCTGATGGAACTTCAGATGAATAAGAGGCAGGCGGCTGACTTGACTGATTCGGTCA
CTTGTTTGAGGGAAGGGGCTCCGTTTTATCAAGTACTAAAGAGTTTGTCATTTCATAAGGAAGCCGTAGGTATTTGTTAT
TTTGCTGAAACACATGGTGAACTGCCTGCTTCAATGATCCAGAGCGGAGAGCTGCTGGAACGAAAAATTGCACAGGCAGA
CCAGCTGAAAAGAGTGCTGCGCTATCCGCTTTTCCTCATCTTTACGGTCGCTGTCATGTTTTATATGTTACAGTCCATCA
TCATTCCTCAGTTTTCCGGTATCTATCAATCGATGAATATGGAAACCTCACGTTCAACCGATATGCTTTTTGCTTTTTTT
CAGCATATTGATCTTGTGATCATTTTGCTTGTTCTTTTTACAGCAGGTATCGGGATTTATTATTGGCTTGTGTTTAAGAA
AAAATCACCTGCCCGGCAAATGCTGATTTGTATCAGGATTCCTTTGGTTGGAAAGCTTGTAAAGCTGTTTAACAGCTACT
TTTTTTCTTTGCAGCTAAGCAGCCTTTTAAAATCAGGCCTCTCAATTTATGACAGCCTTAATGCATTTAAACATCAAACG
TTTCTCCCTTTCTACCGCTGCGAGGCTGAACAATTGATTGAACGGCTAAAAGCCGGTGAGTCAATTGAATCCGCTATTTG
TGGAAGCCTTTTTTATGAAACTGATTTATCAAAAGTCATATCTCACGGCCAGCTGAGCGGCCGATTGGATCGGGAGCTTT
TCACATACAGCCAATTCATATTACAGCGGCTGGAACACAAAGCGCAAAAATGGACAGGCATCCTTCAGCCAATGATTTAT
GGATTTGTTGCAGCGATGATCTTACTTGTGTATTTATCTATGCTTGTGCCTATGTATCAGATGATGAATCAAATGTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(215-337)

Type II secretion system (T2SS), protein F (T2SSF)

(17-136)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGB Bacillus subtilis subsp. subtilis str. 168

100

93.623

0.936