Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   WHL52_RS13160 Genome accession   NZ_CP149576
Coordinates   2513243..2514046 (-) Length   267 a.a.
NCBI ID   WP_003226427.1    Uniprot ID   -
Organism   Bacillus subtilis strain DSM 10     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2508243..2519046
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHL52_RS13135 glpQ 2509389..2510120 (-) 732 WP_003230288.1 glycerophosphodiester phosphodiesterase -
  WHL52_RS13140 yqiI 2510199..2510819 (-) 621 WP_010886565.1 N-acetylmuramoyl-L-alanine amidase -
  WHL52_RS13145 yqiH 2510834..2511127 (-) 294 WP_003230284.1 lipoprotein -
  WHL52_RS13150 - 2511435..2511587 (+) 153 WP_003230276.1 hypothetical protein -
  WHL52_RS13155 yqiG 2511660..2512778 (+) 1119 WP_004398691.1 NADH-dependent flavin oxidoreductase -
  WHL52_RS13160 spo0A 2513243..2514046 (-) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  WHL52_RS13165 spoIVB 2514322..2515602 (-) 1281 WP_004398697.1 SpoIVB peptidase -
  WHL52_RS13170 recN 2515777..2517507 (-) 1731 WP_003230267.1 DNA repair protein RecN Machinery gene
  WHL52_RS13175 argR 2517544..2517993 (-) 450 WP_003230265.1 arginine repressor ArgR -
  WHL52_RS13180 yqxC 2518091..2518936 (-) 846 WP_003230264.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29691.19 Da        Isoelectric Point: 6.3913

>NTDB_id=959968 WHL52_RS13160 WP_003226427.1 2513243..2514046(-) (spo0A) [Bacillus subtilis strain DSM 10]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKKKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=959968 WHL52_RS13160 WP_003226427.1 2513243..2514046(-) (spo0A) [Bacillus subtilis strain DSM 10]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTGGTAAGCCTGTTAAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGCCTGTCGCTGTTTAAAGAAAAAGATCCCGATGTGCTCG
TATTAGATATTATTATGCCGCATCTAGACGGACTTGCGGTTTTAGAGAGGCTGAGGGAATCAGATCTGAAAAAACAGCCG
AATGTCATTATGCTGACAGCCTTTGGGCAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGCGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGCCATATCCGCCAGGTCAGCGGAAATGCCAGCAGTGTGACGCATCGTGCGC
CATCATCGCAAAGCAGTATTATACGCAGCAGCCAGCCTGAACCAAAGAAGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCAGCCCATATTAAAGGCTATCTCTATCTGCGCGAAGCAATCTCAATGGTATACAATGACAT
CGAATTGCTCGGCAGCATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTTAACACAACCGCAAGCCGTGTAGAAA
GAGCGATCCGCCATGCAATTGAAGTGGCATGGAGCAGAGGAAACATTGATTCCATTTCCTCGTTGTTTGGTTATACTGTC
AGCATGACAAAAGCTAAACCTACCAACAGTGAATTCATTGCAATGGTTGCGGATAAGCTGAGGTTAGAGCATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

100

100

1