Detailed information NTG0959969

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ACI3NH_RS14555
• Genome accession: NZ_CP173509
• Coordinates: 3026545..3027537 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain 98215
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3021545..3032537

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACI3NH_RS14535 (ACI3NH_14540)	otnK	3022319..3023582 (+)	1264	Protein_2839	3-oxo-tetronate kinase	-
ACI3NH_RS14540 (ACI3NH_14545)	ygbL	3023579..3024217 (+)	639	WP_001278994.1	aldolase	-
ACI3NH_RS14545 (ACI3NH_14550)	ygbM	3024222..3024998 (+)	777	WP_001136934.1	HPr family phosphocarrier protein	-
ACI3NH_RS14550 (ACI3NH_14555)	ygbN	3025087..3026451 (+)	1365	WP_000104441.1	GntP family transporter	-
ACI3NH_RS14555 (ACI3NH_14560)	rpoS	3026545..3027537 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
ACI3NH_RS14560 (ACI3NH_14565)	nlpD	3027600..3028694 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
ACI3NH_RS14565 (ACI3NH_14570)	pcm	3028879..3029505 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
ACI3NH_RS14570 (ACI3NH_14575)	surE	3029499..3030260 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
ACI3NH_RS14575 (ACI3NH_14580)	truD	3030241..3031290 (-)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
ACI3NH_RS14580 (ACI3NH_14585)	ispF	3031287..3031766 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ACI3NH_RS14585 (ACI3NH_14590)	ispD	3031766..3032476 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=959969 ACI3NH_RS14555 WP_000081550.1 3026545..3027537(-) (rpoS) [Escherichia coli strain 98215]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=959969 ACI3NH_RS14555 WP_000081550.1 3026545..3027537(-) (rpoS) [Escherichia coli strain 98215]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715