Detailed information    

insolico Bioinformatically predicted

Overview

Name   med   Type   Regulator
Locus tag   WHL52_RS06240 Genome accession   NZ_CP149576
Coordinates   1206222..1207175 (+) Length   317 a.a.
NCBI ID   WP_003245494.1    Uniprot ID   A0AAE2SG99
Organism   Bacillus subtilis strain DSM 10     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1201222..1212175
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHL52_RS06215 argF 1203054..1204013 (+) 960 WP_003232980.1 ornithine carbamoyltransferase -
  WHL52_RS06220 yjzC 1204099..1204278 (+) 180 WP_003245356.1 YjzC family protein -
  WHL52_RS06225 yjzD 1204324..1204509 (-) 186 WP_003245236.1 DUF2929 domain-containing protein -
  WHL52_RS06230 - 1204758..1205492 (+) 735 WP_003245223.1 hypothetical protein -
  WHL52_RS06235 - 1205574..1206131 (+) 558 WP_003232974.1 hypothetical protein -
  WHL52_RS06240 med 1206222..1207175 (+) 954 WP_003245494.1 transcriptional regulator Med Regulator
  WHL52_RS06245 comZ 1207190..1207381 (+) 192 WP_003224559.1 ComG operon transcriptional repressor ComZ Regulator
  WHL52_RS06250 yjzB 1207411..1207650 (-) 240 WP_003232972.1 spore coat protein YjzB -
  WHL52_RS06255 fabH 1207815..1208753 (+) 939 WP_003232971.1 beta-ketoacyl-ACP synthase III -
  WHL52_RS06260 fabF 1208776..1210017 (+) 1242 WP_003244890.1 beta-ketoacyl-ACP synthase II -
  WHL52_RS06265 yjaZ 1210093..1210878 (+) 786 WP_003232967.1 DUF2268 domain-containing protein -
  WHL52_RS06270 appD 1211070..1212056 (+) 987 WP_003232965.1 oligopeptide ABC transporter ATP-binding protein AppD -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35310.80 Da        Isoelectric Point: 4.5457

>NTDB_id=959951 WHL52_RS06240 WP_003245494.1 1206222..1207175(+) (med) [Bacillus subtilis strain DSM 10]
MITRLVMIFSVLLLLSGCGQTPFKGKIEKVGMLFPDTINDLVWGTKGYKGLLNIQSKYNVDVYYKEGVKTEEDIINAIED
FHKRGVNLLYGHGSEYAEVFNLVGEDYPDMEFVISNAKAKADNVTSVHFSGEAMGFFGGMTAAHMSKTNQVGVIASFTWQ
PEVDGFIKGAKYENPDIEVNTKYTDHWDDDTTAVKLYQKMKNEGADVVYPAGDGYNVPVIQQIKKDGLYAIGYVTDQSDL
GENTVLTSTVQNVDKAYEIIAEQFNKGTLEGGDHYYDLNTGVVEMGTFSPLVDQDFQQRIAKLIKTYNKTGELPKNE

Nucleotide


Download         Length: 954 bp        

>NTDB_id=959951 WHL52_RS06240 WP_003245494.1 1206222..1207175(+) (med) [Bacillus subtilis strain DSM 10]
TTGATCACAAGGCTTGTCATGATCTTTTCTGTCCTCCTTTTATTGAGTGGATGTGGACAAACTCCGTTCAAAGGAAAAAT
TGAGAAGGTCGGCATGCTCTTTCCTGATACGATTAATGACCTCGTATGGGGCACAAAAGGGTATAAAGGATTACTGAATA
TACAATCCAAATACAATGTGGACGTCTATTATAAAGAAGGCGTTAAAACAGAAGAAGATATCATAAATGCGATTGAGGAT
TTTCATAAGAGGGGCGTCAATCTGCTCTACGGCCATGGGAGTGAATATGCTGAGGTGTTTAACTTGGTCGGCGAAGATTA
TCCAGATATGGAATTCGTCATTTCCAATGCGAAAGCGAAAGCTGATAATGTAACAAGTGTCCATTTTAGCGGGGAAGCAA
TGGGCTTTTTTGGAGGAATGACTGCTGCCCATATGTCGAAAACGAATCAGGTCGGTGTAATTGCTTCCTTTACGTGGCAG
CCTGAGGTTGACGGTTTTATCAAAGGGGCCAAGTATGAAAATCCGGATATAGAGGTAAATACGAAATATACGGATCATTG
GGATGATGATACAACAGCAGTAAAGCTTTATCAGAAAATGAAGAACGAAGGCGCGGATGTTGTGTATCCCGCCGGAGACG
GGTATAATGTTCCTGTTATTCAGCAAATCAAAAAAGACGGTCTTTATGCCATAGGCTACGTCACAGATCAATCGGATCTG
GGCGAGAATACCGTATTAACCAGCACGGTGCAAAATGTGGACAAGGCCTATGAAATCATTGCTGAACAATTTAATAAAGG
CACCCTTGAGGGCGGCGATCATTACTACGACCTGAACACGGGAGTCGTTGAGATGGGAACATTCAGCCCGCTCGTCGATC
AAGACTTTCAGCAAAGAATCGCCAAGCTGATCAAAACATACAACAAAACAGGCGAGCTGCCAAAAAACGAGTAA

Domains

Predicted by InterproScan.

ABC transporter substrate-binding protein PnrA-like (Bmp)

(27-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  med Bacillus subtilis subsp. subtilis str. 168

100

100

1