Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   WJ038_RS12000 Genome accession   NZ_CP149505
Coordinates   2620271..2620885 (+) Length   204 a.a.
NCBI ID   WP_005479697.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain EB101     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 2615271..2625885
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WJ038_RS11980 (WJ038_12030) - 2615555..2616472 (-) 918 WP_005462584.1 ABC transporter ATP-binding protein -
  WJ038_RS11985 (WJ038_12035) - 2616725..2618395 (-) 1671 WP_005493993.1 SulP family inorganic anion transporter -
  WJ038_RS11990 (WJ038_12040) can 2618679..2619347 (+) 669 WP_005462578.1 carbonate dehydratase -
  WJ038_RS11995 (WJ038_12045) hpt 2619422..2619952 (-) 531 WP_005479701.1 hypoxanthine phosphoribosyltransferase -
  WJ038_RS12000 (WJ038_12050) opaR 2620271..2620885 (+) 615 WP_005479697.1 transcriptional regulator OpaR Regulator
  WJ038_RS12005 (WJ038_12055) lpdA 2621013..2622440 (-) 1428 WP_021823119.1 dihydrolipoyl dehydrogenase -
  WJ038_RS12010 (WJ038_12060) aceF 2622709..2624598 (-) 1890 WP_041955272.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23634.94 Da        Isoelectric Point: 6.0781

>NTDB_id=959749 WJ038_RS12000 WP_005479697.1 2620271..2620885(+) (opaR) [Vibrio parahaemolyticus strain EB101]
MDSIAKRPRTRLSPLKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDIHARENIANITNAMIELVSQDCHWLKVWFEWSASTRDEVWPLFVSTNRTNQLLVQNMFIKAIERGEVCDQHDSE
HLANLFHGICYSLFVQANRFKGEAELKELVSAYLDMLCIYNREH

Nucleotide


Download         Length: 615 bp        

>NTDB_id=959749 WJ038_RS12000 WP_005479697.1 2620271..2620885(+) (opaR) [Vibrio parahaemolyticus strain EB101]
ATGGACTCAATTGCAAAGAGACCTAGAACTAGGCTTTCTCCTCTTAAACGTAAGCAACAACTCATGGAAATCGCGTTAGA
AGTATTTGCACGCCGTGGTATTGGCCGTGGAGGTCACGCAGATATTGCTGAAATTGCGCAAGTGTCTGTTGCAACCGTTT
TTAACTACTTCCCAACTCGCGAAGATTTGGTTGATGAAGTTCTCAATCATGTTGTACGTCAGTTCTCGAATTTCCTTTCG
GATAACATCGACCTAGACATACACGCTCGTGAAAACATCGCAAACATCACCAATGCGATGATCGAGCTCGTAAGCCAAGA
TTGTCACTGGCTGAAAGTTTGGTTCGAGTGGAGCGCATCAACTCGTGATGAAGTTTGGCCTCTATTTGTGTCTACCAACC
GCACTAACCAATTATTGGTTCAAAACATGTTCATTAAAGCGATTGAACGCGGTGAAGTGTGTGATCAACACGATTCAGAA
CACTTGGCAAATCTATTCCACGGTATTTGTTACTCGCTGTTCGTACAAGCAAACCGCTTCAAAGGTGAAGCTGAGTTGAA
AGAACTCGTGAGCGCTTACCTAGATATGCTTTGCATCTACAATCGCGAACACTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

100

100

1
  hapR Vibrio cholerae C6706

72.222

97.059

0.701
  hapR Vibrio cholerae strain A1552

72.222

97.059

0.701