Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   WJ038_RS10055 Genome accession   NZ_CP149505
Coordinates   2187258..2188661 (-) Length   467 a.a.
NCBI ID   WP_029862075.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain EB101     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 2182258..2193661
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WJ038_RS10020 (WJ038_10070) moaE 2182831..2183286 (-) 456 WP_005461480.1 molybdopterin synthase catalytic subunit MoaE -
  WJ038_RS10025 (WJ038_10075) moaD 2183288..2183545 (-) 258 WP_005461535.1 molybdopterin synthase sulfur carrier subunit -
  WJ038_RS10030 (WJ038_10080) moaC 2183542..2184021 (-) 480 WP_005461493.1 cyclic pyranopterin monophosphate synthase MoaC -
  WJ038_RS10035 (WJ038_10085) moaB 2184048..2184560 (-) 513 WP_005482393.1 molybdenum cofactor biosynthesis protein B -
  WJ038_RS10040 (WJ038_10090) moaA 2184662..2185651 (-) 990 WP_029804899.1 GTP 3',8-cyclase MoaA -
  WJ038_RS10045 (WJ038_10095) - 2185947..2186840 (+) 894 WP_005494500.1 YvcK family protein -
  WJ038_RS10050 (WJ038_10100) luxU 2186917..2187255 (-) 339 WP_025500803.1 quorum-sensing phosphorelay protein LuxU -
  WJ038_RS10055 (WJ038_10105) luxO 2187258..2188661 (-) 1404 WP_029862075.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  WJ038_RS10060 (WJ038_10110) uvrB 2188950..2190980 (-) 2031 WP_005494496.1 excinuclease ABC subunit UvrB -
  WJ038_RS10070 (WJ038_10120) rsxA 2191971..2192549 (+) 579 WP_005380762.1 electron transport complex subunit RsxA -
  WJ038_RS10075 (WJ038_10125) rsxB 2192553..2193149 (+) 597 WP_005480813.1 electron transport complex subunit RsxB -

Sequence

Protein


Download         Length: 467 a.a.        Molecular weight: 52201.77 Da        Isoelectric Point: 6.2547

>NTDB_id=959747 WJ038_RS10055 WP_029862075.1 2187258..2188661(-) (luxO) [Vibrio parahaemolyticus strain EB101]
MQQKTEGQKSRYLLMVEDTASVAALYRSYLTPLGIDINIVGTGRDAIESLNHRIPDLILLDLRLPDMTGMDVLHAVKKSH
PDVPIIFMTAHGSIDTAVEAMRHGSQDFLIKPCEADRLRVTVNNAIRKATKLKNEADNPGNQNYQGFIGSSQTMQQVYRT
IDSVASSKASIFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAANDRQGAAELADG
GTLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRE
RGEDVIEIAYSLLGYMSHEEGKNFVRFSQEVIDRFNSYEWPGNVRQLQNVLRNIVVLNNGKEITLDMLPPPLNQPLDRPS
VSKLIEPKAMTVSEIMPLWMTEKMAIEQAIEACDGNIPRAAGYLDVSPSTIYRKLQAWNGKEERQKV

Nucleotide


Download         Length: 1404 bp        

>NTDB_id=959747 WJ038_RS10055 WP_029862075.1 2187258..2188661(-) (luxO) [Vibrio parahaemolyticus strain EB101]
ATGCAACAAAAAACTGAAGGCCAAAAATCTCGTTACCTTCTGATGGTTGAGGATACAGCATCGGTTGCGGCGTTATACCG
CTCGTACCTCACGCCGTTAGGGATCGACATTAATATTGTCGGTACAGGTAGAGATGCCATTGAAAGTCTCAATCATCGAA
TTCCAGATCTTATTCTTCTTGATCTTCGTCTGCCTGATATGACGGGGATGGATGTTTTGCATGCCGTTAAAAAGAGTCAT
CCAGATGTGCCGATCATTTTCATGACGGCTCATGGCTCTATCGATACAGCGGTAGAAGCGATGCGTCATGGCTCTCAAGA
CTTTTTGATCAAACCGTGTGAAGCAGACCGTCTGCGTGTTACGGTCAACAACGCAATTCGAAAAGCAACTAAACTAAAAA
ATGAAGCAGATAATCCGGGTAATCAGAATTACCAAGGTTTTATCGGCAGCAGCCAAACCATGCAGCAGGTCTATCGCACC
ATTGACTCTGTCGCTAGCAGTAAAGCGAGTATCTTTATTACTGGTGAAAGTGGTACGGGTAAAGAGGTATGCGCAGAAGC
CATCCACGCTGCAAGCAAACGTGGTGATAAGCCGTTTATTGCCATCAACTGTGCAGCCATACCTAAAGACTTAATTGAAA
GTGAACTATTTGGTCACGTAAAAGGGGCATTTACTGGTGCGGCAAATGACCGTCAAGGTGCCGCTGAGTTAGCCGATGGT
GGCACGTTGTTCCTCGATGAATTGTGTGAAATGGATTTGGACTTACAAACCAAATTATTGCGATTCATCCAAACCGGTAC
GTTCCAGAAAGTGGGTTCTTCAAAAATGAAGAGTGTGGACGTGCGCTTCGTTTGTGCGACCAACCGAGACCCTTGGAAAG
AAGTTCAAGAAGGGCGTTTCCGCGAAGACTTATACTACCGTTTATACGTGATTCCTTTGCATCTTCCGCCTCTTCGCGAA
CGTGGTGAAGATGTGATTGAAATTGCGTACTCACTGTTAGGCTACATGTCTCATGAAGAGGGCAAAAACTTTGTCCGCTT
TTCTCAAGAAGTGATTGACCGCTTTAACAGTTATGAGTGGCCGGGTAACGTCCGACAACTACAAAACGTACTACGCAATA
TCGTGGTGCTCAACAACGGCAAAGAAATTACGTTAGATATGTTGCCACCGCCGCTGAATCAACCGTTAGATAGGCCATCT
GTATCTAAACTGATTGAGCCAAAAGCGATGACTGTTTCAGAGATCATGCCGCTATGGATGACAGAGAAAATGGCGATTGA
GCAAGCGATTGAGGCGTGTGACGGCAATATTCCAAGAGCCGCTGGGTATCTTGATGTCAGTCCGTCAACGATTTACCGCA
AACTACAAGCATGGAATGGTAAAGAAGAGCGGCAGAAGGTGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(14-122)

Sigma-54 interaction domain (Sigma54_activat)

(148-313)

Bacterial regulatory protein, Fis family (HTH_8)

(418-458)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

87.277

95.931

0.837
  pilR Pseudomonas aeruginosa PAK

38.393

95.931

0.368