Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   ACI3MX_RS15215 Genome accession   NZ_CP173463
Coordinates   2915000..2915656 (+) Length   218 a.a.
NCBI ID   WP_000611328.1    Uniprot ID   P66797
Organism   Escherichia coli strain 98228     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2910000..2920656
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI3MX_RS15185 (ACI3MX_15185) dcyD 2910880..2911866 (+) 987 WP_020232905.1 D-cysteine desulfhydrase -
  ACI3MX_RS15190 (ACI3MX_15190) tcyL 2911881..2912549 (+) 669 WP_001158220.1 cystine ABC transporter permease -
  ACI3MX_RS15195 (ACI3MX_15195) tcyN 2912546..2913298 (+) 753 WP_001272994.1 L-cystine ABC transporter ATP-binding protein TcyN -
  ACI3MX_RS15200 (ACI3MX_15200) sdiA 2913528..2914250 (+) 723 WP_001154271.1 transcriptional regulator SdiA -
  ACI3MX_RS15205 (ACI3MX_15205) yecF 2914317..2914541 (-) 225 WP_000106474.1 DUF2594 family protein YecF -
  ACI3MX_RS15210 (ACI3MX_15210) yecU 2914528..2914704 (-) 177 WP_000590347.1 protein YecU -
  ACI3MX_RS15215 (ACI3MX_15215) letA 2915000..2915656 (+) 657 WP_000611328.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  ACI3MX_RS15220 (ACI3MX_15220) uvrC 2915653..2917485 (+) 1833 WP_001283421.1 excinuclease ABC subunit UvrC Machinery gene
  ACI3MX_RS15225 (ACI3MX_15225) pgsA 2917542..2918090 (+) 549 WP_001160187.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ACI3MX_RS15245 (ACI3MX_15245) yecA 2918740..2919405 (+) 666 WP_000847881.1 UPF0149 family protein YecA -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 23862.63 Da        Isoelectric Point: 6.9614

>NTDB_id=959321 ACI3MX_RS15215 WP_000611328.1 2915000..2915656(+) (letA) [Escherichia coli strain 98228]
MINVLLVDDHELVRAGIRRILEDIKGIKVVGEASCGEDAVKWCRANAVDVVLMDMSMPGIGGLEATRKIARSTADVKIIM
LTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVYSGQRYIASDIAQQMALSQIEPEKTESPFASLSERELQIMLM
ITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVELTHLAIRHGLCNAETLSSQ

Nucleotide


Download         Length: 657 bp        

>NTDB_id=959321 ACI3MX_RS15215 WP_000611328.1 2915000..2915656(+) (letA) [Escherichia coli strain 98228]
TTGATCAACGTTCTACTTGTTGATGACCACGAACTGGTGCGCGCAGGGATACGACGCATTCTGGAAGATATAAAGGGTAT
AAAAGTCGTCGGTGAGGCATCGTGCGGTGAAGACGCCGTTAAATGGTGCCGGGCAAATGCCGTTGACGTGGTGCTAATGG
ACATGAGTATGCCGGGCATTGGCGGTCTTGAGGCGACGCGTAAAATCGCGCGTTCCACAGCTGATGTCAAAATCATCATG
CTTACCGTCCATACAGAAAACCCTTTACCAGCGAAAGTCATGCAGGCCGGTGCTGCTGGCTACCTCAGCAAAGGCGCGGC
TCCGCAGGAAGTCGTGAGTGCGATCCGTTCTGTCTATTCAGGGCAGCGTTACATTGCTTCTGACATCGCTCAACAAATGG
CGTTAAGCCAGATCGAACCAGAAAAAACAGAAAGCCCATTTGCCAGTTTGTCTGAACGTGAATTGCAGATTATGCTGATG
ATCACCAAGGGCCAGAAGGTCAATGAGATCTCAGAACAGCTCAATCTCAGTCCGAAAACGGTGAACAGCTACCGCTATCG
TATGTTCAGTAAACTAAACATTCATGGCGATGTTGAGCTGACTCACCTGGCAATTCGCCATGGTCTGTGTAATGCGGAGA
CATTATCAAGTCAGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(149-204)

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P66797

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

50.725

94.954

0.482
  letA Legionella pneumophila strain ERS1305867

50.725

94.954

0.482