Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   ACI3NA_RS13480 Genome accession   NZ_CP173445
Coordinates   2574656..2575132 (+) Length   158 a.a.
NCBI ID   WP_001186775.1    Uniprot ID   A7ZVJ5
Organism   Escherichia coli strain 98233     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2569656..2580132
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACI3NA_RS13450 (ACI3NA_13445) - 2570279..2571892 (-) 1614 WP_000080200.1 IS66-like element ISEc23 family transposase -
  ACI3NA_RS13455 (ACI3NA_13450) tnpB 2571923..2572273 (-) 351 WP_000624722.1 IS66 family insertion sequence element accessory protein TnpB -
  ACI3NA_RS13460 (ACI3NA_13455) tnpA 2572270..2572695 (-) 426 WP_000422741.1 IS66-like element accessory protein TnpA -
  ACI3NA_RS13465 (ACI3NA_13460) - 2572787..2572889 (+) 103 Protein_2410 DUF905 family protein -
  ACI3NA_RS13470 (ACI3NA_13465) - 2573007..2573825 (+) 819 WP_001234656.1 DUF932 domain-containing protein -
  ACI3NA_RS13475 (ACI3NA_13470) - 2574167..2574640 (+) 474 WP_001350782.1 antirestriction protein -
  ACI3NA_RS13480 (ACI3NA_13475) radC 2574656..2575132 (+) 477 WP_001186775.1 RadC family protein Machinery gene
  ACI3NA_RS13485 (ACI3NA_13480) yeeT 2575195..2575416 (+) 222 WP_000692345.1 DUF987 domain-containing protein -
  ACI3NA_RS13490 (ACI3NA_13485) - 2575579..2575947 (+) 369 WP_001295723.1 type IV toxin-antitoxin system YeeU family antitoxin -
  ACI3NA_RS13495 (ACI3NA_13490) - 2576037..2576135 (+) 99 Protein_2416 TA system toxin CbtA family protein -
  ACI3NA_RS13500 (ACI3NA_13495) mtnK 2576875..2578134 (+) 1260 WP_000132327.1 S-methyl-5-thioribose kinase -
  ACI3NA_RS13505 (ACI3NA_13500) mtnA 2578144..2579259 (+) 1116 WP_001022014.1 S-methyl-5-thioribose-1-phosphate isomerase -
  ACI3NA_RS13510 (ACI3NA_13505) - 2579290..2579931 (+) 642 WP_000439687.1 L-fuculose-phosphate aldolase -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17687.30 Da        Isoelectric Point: 7.1437

>NTDB_id=959151 ACI3NA_RS13480 WP_001186775.1 2574656..2575132(+) (radC) [Escherichia coli strain 98233]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEYGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=959151 ACI3NA_RS13480 WP_001186775.1 2574656..2575132(+) (radC) [Escherichia coli strain 98233]
ATGCAACAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGAGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCTGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAATATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-156)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7ZVJ5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399