Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   WDR05_RS18215 Genome accession   NZ_CP149444
Coordinates   3506130..3506819 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus subtilis strain HC-9     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3501130..3511819
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WDR05_RS18180 (WDR05_18160) flgN 3501310..3501792 (-) 483 WP_014481048.1 flagellar protein FlgN -
  WDR05_RS18185 (WDR05_18165) flgM 3501808..3502074 (-) 267 WP_014478128.1 flagellar biosynthesis anti-sigma factor FlgM -
  WDR05_RS18190 (WDR05_18170) yvyF 3502155..3502574 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  WDR05_RS18195 (WDR05_18175) comFC 3502648..3503370 (-) 723 WP_029725992.1 comF operon protein ComFC Machinery gene
  WDR05_RS18200 (WDR05_18180) comFB 3503334..3503630 (-) 297 WP_015483764.1 late competence protein ComFB -
  WDR05_RS18205 (WDR05_18185) comFA 3503690..3505081 (-) 1392 WP_029725993.1 ATP-dependent helicase ComFA Machinery gene
  WDR05_RS18210 (WDR05_18190) fakBA 3505187..3506032 (-) 846 WP_003227986.1 DegV family protein -
  WDR05_RS18215 (WDR05_18195) degU 3506130..3506819 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  WDR05_RS18220 (WDR05_18200) degS 3506902..3508059 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  WDR05_RS18225 (WDR05_18205) yvyE 3508276..3508929 (+) 654 WP_003227979.1 YigZ family protein -
  WDR05_RS18230 (WDR05_18210) tagV 3508929..3510104 (+) 1176 WP_003227977.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  WDR05_RS18235 (WDR05_18215) tagO 3510177..3511253 (-) 1077 WP_003227975.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=959152 WDR05_RS18215 WP_003219701.1 3506130..3506819(-) (degU) [Bacillus subtilis strain HC-9]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=959152 WDR05_RS18215 WP_003219701.1 3506130..3506819(-) (degU) [Bacillus subtilis strain HC-9]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGAGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTTCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGTATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCAATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1