Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   WDR05_RS12790 Genome accession   NZ_CP149444
Coordinates   2462959..2464029 (-) Length   356 a.a.
NCBI ID   WP_004399124.1    Uniprot ID   A0A809FNW6
Organism   Bacillus subtilis strain HC-9     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2457959..2469029
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WDR05_RS12745 (WDR05_12735) tapA 2458437..2459198 (-) 762 WP_029726724.1 amyloid fiber anchoring/assembly protein TapA -
  WDR05_RS12750 (WDR05_12740) yqzG 2459470..2459796 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  WDR05_RS12755 (WDR05_12745) spoIITA 2459838..2460017 (-) 180 WP_029726723.1 YqzE family protein -
  WDR05_RS12760 (WDR05_12750) comGG 2460089..2460463 (-) 375 WP_029726722.1 ComG operon protein ComGG Machinery gene
  WDR05_RS12765 (WDR05_12755) comGF 2460464..2460847 (-) 384 WP_029726721.1 ComG operon protein ComGF Machinery gene
  WDR05_RS12770 (WDR05_12760) comGE 2460873..2461220 (-) 348 WP_014480255.1 ComG operon protein 5 Machinery gene
  WDR05_RS12775 (WDR05_12765) comGD 2461204..2461635 (-) 432 WP_029726720.1 comG operon protein ComGD Machinery gene
  WDR05_RS12780 (WDR05_12770) comGC 2461625..2461921 (-) 297 WP_029726719.1 comG operon protein ComGC Machinery gene
  WDR05_RS12785 (WDR05_12775) comGB 2461935..2462972 (-) 1038 WP_029726718.1 comG operon protein ComGB Machinery gene
  WDR05_RS12790 (WDR05_12780) comGA 2462959..2464029 (-) 1071 WP_004399124.1 competence protein ComGA Machinery gene
  WDR05_RS12795 (WDR05_12785) - 2464242..2464439 (-) 198 WP_029726717.1 hypothetical protein -
  WDR05_RS12800 (WDR05_12790) corA 2464441..2465394 (-) 954 WP_004399136.1 magnesium transporter CorA -
  WDR05_RS12805 (WDR05_12795) yqhB 2465537..2466865 (+) 1329 WP_029726716.1 hemolysin family protein -
  WDR05_RS12810 (WDR05_12800) rsbRD 2466918..2467754 (-) 837 WP_003230149.1 RsbT co-antagonist protein RsbRD -
  WDR05_RS12820 (WDR05_12810) mgsR 2467978..2468358 (-) 381 WP_003230147.1 transcriptional regulator MgsR -
  WDR05_RS12825 (WDR05_12815) yqgY 2468590..2468835 (+) 246 WP_003226300.1 DUF2626 domain-containing protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 40458.64 Da        Isoelectric Point: 9.0175

>NTDB_id=959131 WDR05_RS12790 WP_004399124.1 2462959..2464029(-) (comGA) [Bacillus subtilis strain HC-9]
MDSIEKVSKNLIEEAYLTKASDIHIVPRERDAIIHFRVDHALLKKRDMKKEECVRLISHFKFLSAMDIGERRKPQNGSLT
LKLKEGNVHLRMSTLPTINEESLVIRVMPQYNIPSIDKLSLFPKTGATLLSFLKHSHGMLIFTGPTGSGKTTTLYSLVQY
AKKHFNRNIVTLEDPVETRDEDVLQVQVNEKAGVTYSAGLKAILRHDPDMIILGEIRDAETAEIAVRAAMTGHLVLTSLH
TRDAKGAIYRLLEFGINMNEIEQTVIAIAAQRLVDLACPFCENGCSSVYCRQSRNTRRASVYELLYGKNLQQCIQEAKGN
HANYQYQTLRQIIRKGIALGYLTTNNYDRWVYHEKD

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=959131 WDR05_RS12790 WP_004399124.1 2462959..2464029(-) (comGA) [Bacillus subtilis strain HC-9]
TTGGATTCAATAGAAAAGGTAAGCAAAAACTTGATTGAAGAGGCATATCTAACAAAGGCTTCTGATATTCACATTGTGCC
GAGGGAGCGGGACGCTATCATTCATTTTCGGGTCGATCATGCCTTGCTGAAAAAAAGGGACATGAAAAAAGAAGAGTGCG
TAAGGCTGATTTCACATTTTAAATTTCTTTCAGCAATGGATATAGGTGAAAGGCGAAAGCCGCAAAACGGTTCGCTTACG
TTAAAGCTGAAAGAGGGAAATGTTCATTTAAGAATGTCAACGCTGCCCACAATTAATGAAGAAAGCCTCGTGATCAGAGT
GATGCCCCAATACAATATCCCTTCGATTGATAAATTGTCGCTATTTCCGAAGACAGGAGCCACATTACTCTCGTTTTTAA
AACATTCCCATGGCATGCTCATTTTTACCGGGCCAACTGGTTCAGGGAAGACTACCACACTATACTCTCTCGTTCAATAT
GCAAAAAAACACTTTAATCGAAATATTGTCACATTAGAGGACCCTGTTGAAACAAGGGACGAAGATGTTCTTCAGGTTCA
GGTGAATGAAAAAGCCGGTGTAACTTATTCCGCAGGTCTGAAAGCAATTTTGCGCCATGACCCCGATATGATTATTTTAG
GTGAGATCAGAGACGCGGAAACAGCTGAAATTGCGGTGCGGGCAGCGATGACGGGACATCTGGTACTAACGAGCCTTCAT
ACGAGAGACGCAAAGGGCGCAATTTACAGACTGCTTGAATTCGGTATCAATATGAATGAAATCGAACAGACTGTCATTGC
AATAGCGGCTCAGCGCTTGGTTGATTTGGCTTGCCCGTTTTGTGAAAACGGATGTTCATCAGTGTATTGCCGACAGTCAC
GAAATACCAGGAGAGCTAGCGTTTATGAGCTTCTATACGGGAAAAATCTTCAGCAATGTATCCAGGAGGCAAAAGGAAAT
CATGCAAATTACCAATATCAAACGCTTCGTCAAATTATCAGAAAAGGAATTGCGCTCGGCTATTTAACGACAAACAACTA
TGACCGGTGGGTTTATCATGAAAAAGATTAG

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FNW6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

100

100

1