Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   WDR05_RS12545 Genome accession   NZ_CP149444
Coordinates   2424505..2426235 (-) Length   576 a.a.
NCBI ID   WP_029726732.1    Uniprot ID   -
Organism   Bacillus subtilis strain HC-9     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2419505..2431235
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WDR05_RS12520 (WDR05_12510) - 2419560..2419856 (-) 297 WP_014480225.1 hypothetical protein -
  WDR05_RS12525 (WDR05_12515) - 2420164..2420316 (+) 153 WP_014480226.1 hypothetical protein -
  WDR05_RS12530 (WDR05_12520) yqiG 2420389..2421507 (+) 1119 WP_042976476.1 NADH-dependent flavin oxidoreductase -
  WDR05_RS12535 (WDR05_12525) spo0A 2421972..2422775 (-) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  WDR05_RS12540 (WDR05_12530) spoIVB 2423051..2424331 (-) 1281 WP_004398697.1 SpoIVB peptidase -
  WDR05_RS12545 (WDR05_12535) recN 2424505..2426235 (-) 1731 WP_029726732.1 DNA repair protein RecN Machinery gene
  WDR05_RS12550 (WDR05_12540) argR 2426272..2426721 (-) 450 WP_003230265.1 arginine repressor ArgR -
  WDR05_RS12555 (WDR05_12545) yqxC 2426819..2427664 (-) 846 WP_003230264.1 TlyA family RNA methyltransferase -
  WDR05_RS12560 (WDR05_12550) dxs 2427661..2429562 (-) 1902 WP_003245985.1 1-deoxy-D-xylulose-5-phosphate synthase -
  WDR05_RS12565 (WDR05_12555) ispA 2429737..2430627 (-) 891 WP_003230262.1 polyprenyl synthetase family protein -
  WDR05_RS12570 (WDR05_12560) xseB 2430617..2430874 (-) 258 WP_029726731.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 576 a.a.        Molecular weight: 64570.50 Da        Isoelectric Point: 4.7697

>NTDB_id=959122 WDR05_RS12545 WP_029726732.1 2424505..2426235(-) (recN) [Bacillus subtilis strain HC-9]
MLAELSIKNFAIIEELTVSFERGLTVLTGETGAGKSIIIDAISLLVGGRGSSEFVRYGEAKAELEGLFLLESGHPVLGVC
AEQGIDVSDEMIVMRRDISTSGKSVCRVNGKLVTIASLREIGRLLLDIHGQHDNQLLMEDENHLQLLDKFAGAEVESALK
TYQEGYQRYMKLLKKLKQLSESEQEMAHRLDLIQFQLEEIESAKLELNEDEQLQEERQQISNFEKIYESLQNAYNALRSE
QGGLDWVGMASAQLEDISDINEPLKKMSESVSNSYYLLEDATFQMRNMLDELEFDPERLNYIEMRLNEIKQLKRKYGATV
EDILEYASKIEEEIDQIENRDSHLQSLKKELDSVGKDVAVEAANVSQIRKTWAKKLADEIHRELKSLYMEKSTFDTEFKV
RTASRNEEAPLVNGQPVQLTEQGIDLVKFLISTNTGEPLKSLSKVASGGELSRVMLAIKSIFSSQQDVTSIIFDEVDTGV
SGRVAQAIAEKIHKVSIGSQVLCITHLPQVAAMADTHLYIAKELKDGRTTTRVKPLSKQEKVAEIGRMIAGVEVTDLTKR
HAKELLKQADQVKTTG

Nucleotide


Download         Length: 1731 bp        

>NTDB_id=959122 WDR05_RS12545 WP_029726732.1 2424505..2426235(-) (recN) [Bacillus subtilis strain HC-9]
TTGTTAGCTGAACTATCGATTAAAAACTTTGCCATTATTGAGGAACTGACGGTTTCTTTTGAACGCGGGCTTACGGTTTT
AACAGGAGAAACCGGAGCCGGCAAATCCATCATCATAGATGCCATTTCTCTTTTAGTCGGAGGCCGCGGATCATCTGAAT
TTGTTAGATATGGGGAAGCAAAAGCCGAACTTGAAGGGCTGTTTCTGTTGGAGAGCGGCCATCCTGTTTTAGGCGTATGC
GCTGAGCAGGGAATCGACGTTTCAGACGAAATGATCGTCATGAGAAGGGATATCAGCACGAGCGGGAAAAGCGTTTGCCG
TGTCAATGGCAAGCTTGTCACGATTGCTTCGCTAAGAGAGATCGGCAGGCTTTTATTAGATATTCACGGGCAGCACGATA
ACCAGCTGTTAATGGAAGACGAAAATCATCTCCAGCTTTTGGACAAGTTTGCCGGGGCCGAAGTGGAAAGCGCGCTTAAA
ACGTATCAGGAAGGGTACCAGCGGTATATGAAGCTGCTCAAAAAGCTTAAGCAGCTTTCTGAAAGCGAACAGGAAATGGC
CCATCGTCTTGATCTTATTCAATTTCAGCTCGAAGAAATCGAATCGGCAAAGCTTGAGCTTAACGAAGATGAACAGCTCC
AAGAAGAGCGCCAGCAAATTTCAAACTTTGAGAAGATATATGAGTCGCTGCAAAATGCATATAACGCGCTTCGCAGTGAG
CAGGGCGGATTGGACTGGGTTGGAATGGCATCAGCGCAGCTTGAAGATATATCTGATATAAACGAACCGCTGAAAAAAAT
GTCTGAAAGTGTTTCGAACTCCTACTATTTGCTTGAGGATGCCACATTTCAGATGAGAAATATGCTGGATGAGCTTGAAT
TTGATCCAGAACGCCTGAACTATATTGAGATGCGACTTAATGAAATCAAACAGCTGAAACGAAAATACGGTGCCACTGTT
GAAGACATTTTGGAATATGCTTCTAAAATTGAAGAAGAGATTGACCAAATTGAAAACAGGGACAGCCACCTTCAAAGCTT
GAAAAAGGAGCTTGACTCCGTCGGCAAAGATGTCGCAGTGGAAGCGGCAAATGTGTCACAAATCCGAAAAACATGGGCGA
AAAAGCTGGCTGATGAGATTCATCGGGAATTAAAAAGCCTGTACATGGAAAAATCAACTTTTGATACGGAATTTAAGGTC
AGAACAGCGTCACGCAATGAAGAGGCTCCGCTTGTAAACGGCCAGCCCGTTCAGCTGACTGAACAAGGGATTGACCTGGT
GAAGTTTTTAATTTCGACCAATACAGGCGAGCCGCTGAAATCCCTTTCGAAAGTCGCTTCAGGTGGAGAGCTGTCACGGG
TGATGCTTGCCATAAAAAGCATTTTTTCTTCACAACAGGATGTGACATCGATCATTTTTGATGAGGTTGATACCGGTGTA
AGCGGCAGGGTCGCACAGGCAATTGCTGAGAAGATCCATAAGGTGTCAATAGGATCACAAGTGCTGTGCATTACACACCT
GCCTCAGGTGGCTGCCATGGCCGATACGCATCTTTATATTGCGAAGGAGCTAAAAGACGGCAGAACGACGACACGTGTCA
AGCCGCTGTCTAAGCAGGAAAAGGTAGCGGAAATCGGGCGCATGATTGCAGGTGTCGAAGTAACCGATTTAACGAAACGC
CATGCGAAAGAACTTTTAAAACAAGCGGATCAAGTCAAAACAACTGGGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_23)

(4-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

99.653

100

0.997