Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   WDR05_RS12535 Genome accession   NZ_CP149444
Coordinates   2421972..2422775 (-) Length   267 a.a.
NCBI ID   WP_003226427.1    Uniprot ID   -
Organism   Bacillus subtilis strain HC-9     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2416972..2427775
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WDR05_RS12510 (WDR05_12500) glpQB 2418110..2418841 (-) 732 WP_015714234.1 glycerophosphodiester phosphodiesterase -
  WDR05_RS12515 (WDR05_12505) yqiI 2418920..2419540 (-) 621 WP_072173938.1 N-acetylmuramoyl-L-alanine amidase -
  WDR05_RS12520 (WDR05_12510) - 2419560..2419856 (-) 297 WP_014480225.1 hypothetical protein -
  WDR05_RS12525 (WDR05_12515) - 2420164..2420316 (+) 153 WP_014480226.1 hypothetical protein -
  WDR05_RS12530 (WDR05_12520) yqiG 2420389..2421507 (+) 1119 WP_042976476.1 NADH-dependent flavin oxidoreductase -
  WDR05_RS12535 (WDR05_12525) spo0A 2421972..2422775 (-) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  WDR05_RS12540 (WDR05_12530) spoIVB 2423051..2424331 (-) 1281 WP_004398697.1 SpoIVB peptidase -
  WDR05_RS12545 (WDR05_12535) recN 2424505..2426235 (-) 1731 WP_029726732.1 DNA repair protein RecN Machinery gene
  WDR05_RS12550 (WDR05_12540) argR 2426272..2426721 (-) 450 WP_003230265.1 arginine repressor ArgR -
  WDR05_RS12555 (WDR05_12545) yqxC 2426819..2427664 (-) 846 WP_003230264.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29691.19 Da        Isoelectric Point: 6.3913

>NTDB_id=959121 WDR05_RS12535 WP_003226427.1 2421972..2422775(-) (spo0A) [Bacillus subtilis strain HC-9]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKKKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=959121 WDR05_RS12535 WP_003226427.1 2421972..2422775(-) (spo0A) [Bacillus subtilis strain HC-9]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTGGTAAGCCTGTTAAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGCCTGTCGCTGTTTAAAGAAAAAGATCCCGATGTGCTCG
TATTAGATATTATTATGCCGCATCTAGACGGACTTGCGGTTTTAGAGAGGCTGAGGGAATCAGATCTGAAAAAACAGCCG
AATGTCATTATGCTGACAGCCTTTGGGCAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGCGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGCCATATCCGCCAGGTCAGCGGAAATGCCAGCAGTGTGACGCATCGTGCGC
CATCATCGCAAAGCAGTATTATACGCAGCAGCCAGCCTGAACCAAAGAAGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCAGCCCATATTAAAGGCTATCTCTATCTGCGCGAAGCAATCTCAATGGTATACAATGACAT
CGAATTGCTCGGCAGCATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTTAACACAACCGCAAGCCGTGTAGAAA
GAGCGATCCGTCATGCAATTGAAGTGGCATGGAGCAGAGGAAACATTGATTCCATTTCCTCGTTGTTCGGTTATACTGTC
AGCATGACAAAAGCTAAACCGACAAATTCGGAGTTCATTGCAATGGTTGCGGATAAGCTGAGGTTAGAGCATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

100

100

1