Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   AABA19_RS00200 Genome accession   NZ_AP028609
Coordinates   37045..37815 (+) Length   256 a.a.
NCBI ID   WP_000616164.1    Uniprot ID   Q97TA7
Organism   Streptococcus pneumoniae strain Sep4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 32045..42815
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABA19_RS00180 (TKY121806_00310) - 34055..34492 (+) 438 WP_000076480.1 CoA-binding protein -
  AABA19_RS00185 - 34533..34691 (+) 159 WP_050096627.1 hypothetical protein -
  AABA19_RS00190 (TKY121806_00320) - 34720..35730 (-) 1011 WP_000009173.1 YeiH family protein -
  AABA19_RS00195 (TKY121806_00330) - 35879..37048 (+) 1170 WP_000366351.1 pyridoxal phosphate-dependent aminotransferase -
  AABA19_RS00200 (TKY121806_00340) recO 37045..37815 (+) 771 WP_000616164.1 DNA repair protein RecO Machinery gene
  AABA19_RS00205 (TKY121806_00350) plsX 37812..38804 (+) 993 WP_000717461.1 phosphate acyltransferase PlsX -
  AABA19_RS00210 (TKY121806_00360) - 38810..39043 (+) 234 WP_000136447.1 acyl carrier protein -
  AABA19_RS00215 (TKY121806_00370) - 39080..39379 (+) 300 Protein_35 transposase family protein -
  AABA19_RS00220 (TKY121806_00380) blpU 39582..39812 (+) 231 WP_001093075.1 bacteriocin-like peptide BlpU -
  AABA19_RS00225 - 39815..39940 (+) 126 WP_000346297.1 PncF family bacteriocin immunity protein -
  AABA19_RS00230 - 40351..40545 (+) 195 WP_000756776.1 hypothetical protein -
  AABA19_RS00235 (TKY121806_00390) comR 40566..41459 (+) 894 WP_000343891.1 helix-turn-helix domain-containing protein Regulator
  AABA19_RS00240 (TKY121806_00400) - 42002..42298 (+) 297 WP_000837726.1 uberolysin/carnocyclin family circular bacteriocin -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29787.35 Da        Isoelectric Point: 5.8959

>NTDB_id=95912 AABA19_RS00200 WP_000616164.1 37045..37815(+) (recO) [Streptococcus pneumoniae strain Sep4]
MIQSITSQGLVLYNRNFREDDKLVKIFTEQVGKRMFFVKHAGQSKLAPVIQPLVLARFLLRINDDGLSYIEDYHEVMTFP
KINSDLFVMAYATYVAALADASLQDNQQDAPLFAFLQKTLELMEAGLDYQVLTNIFEIQILTRFGISLNFNECVFCHRVG
QAFDFSFKYGACLCPEHYHEDKRRCHLNPNIPYLLNQFQAIDFETLETISLKPGIKQELRQFMDQLYEEYVGIHLKSKKF
IDSLADWGQLLKEEKK

Nucleotide


Download         Length: 771 bp        

>NTDB_id=95912 AABA19_RS00200 WP_000616164.1 37045..37815(+) (recO) [Streptococcus pneumoniae strain Sep4]
ATGATTCAGTCTATCACGAGTCAAGGCTTGGTGCTTTACAATCGCAATTTTCGTGAGGATGACAAGCTCGTCAAAATTTT
TACAGAGCAGGTTGGCAAACGCATGTTTTTTGTCAAACACGCTGGTCAGTCTAAGCTGGCGCCTGTTATTCAGCCCTTGG
TGCTGGCACGATTTCTCTTGCGAATCAATGATGACGGACTCAGTTACATCGAAGACTATCATGAGGTCATGACTTTTCCC
AAGATTAATAGTGACCTCTTTGTCATGGCCTATGCGACCTATGTGGCAGCTCTTGCAGATGCTAGTTTGCAGGACAATCA
GCAGGATGCTCCCTTGTTTGCTTTTTTGCAAAAGACTTTGGAGTTGATGGAAGCAGGCTTGGATTATCAGGTTTTGACCA
ATATTTTTGAAATTCAAATTTTGACTCGATTTGGAATCAGCCTCAATTTTAATGAGTGTGTCTTCTGCCATCGGGTTGGT
CAGGCTTTTGACTTTTCTTTCAAATATGGAGCCTGCCTCTGTCCAGAGCATTATCATGAGGATAAGAGACGTTGTCATCT
CAATCCCAATATCCCCTATCTGCTCAATCAATTTCAAGCTATTGATTTTGAGACTTTGGAGACCATTTCGCTCAAGCCTG
GAATCAAGCAAGAGCTACGCCAATTTATGGATCAATTATATGAAGAGTACGTTGGGATTCACCTAAAATCAAAGAAATTT
ATTGATTCCCTAGCAGACTGGGGACAATTACTAAAAGAGGAAAAGAAATGA

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(84-238)

Recombination protein O N terminal (RecO_N)

(4-72)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q97TA7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

99.219

100

0.992

Multiple sequence alignment