Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   ACIRXL_RS07300 Genome accession   NZ_CP173236
Coordinates   1478957..1479676 (-) Length   239 a.a.
NCBI ID   WP_264245430.1    Uniprot ID   -
Organism   Avibacterium paragallinarum strain npAP/GA-USA/20231216/S1-1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1473957..1484676
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIRXL_RS07285 (ACIRXL_07285) recC 1474588..1477992 (-) 3405 WP_410680853.1 exodeoxyribonuclease V subunit gamma -
  ACIRXL_RS07290 (ACIRXL_07290) comQ 1478004..1478309 (-) 306 WP_017806953.1 DUF5374 domain-containing protein Machinery gene
  ACIRXL_RS07295 (ACIRXL_07295) - 1478290..1478955 (-) 666 WP_410680851.1 DUF2572 family protein -
  ACIRXL_RS07300 (ACIRXL_07300) comO 1478957..1479676 (-) 720 WP_264245430.1 hypothetical protein Machinery gene
  ACIRXL_RS07305 (ACIRXL_07305) comN 1479678..1480199 (-) 522 WP_410680849.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  ACIRXL_RS07325 (ACIRXL_07325) pal 1480839..1481291 (-) 453 WP_264256501.1 peptidoglycan-associated lipoprotein Pal -
  ACIRXL_RS07330 (ACIRXL_07330) tolB 1481302..1482591 (-) 1290 WP_410681049.1 Tol-Pal system beta propeller repeat protein TolB -
  ACIRXL_RS07335 (ACIRXL_07335) tolA 1482643..1483761 (-) 1119 WP_410680847.1 cell envelope integrity protein TolA -
  ACIRXL_RS07340 (ACIRXL_07340) tolR 1483778..1484200 (-) 423 WP_410680845.1 colicin uptake protein TolR -

Sequence

Protein


Download         Length: 239 a.a.        Molecular weight: 27804.11 Da        Isoelectric Point: 8.4448

>NTDB_id=957774 ACIRXL_RS07300 WP_264245430.1 1478957..1479676(-) (comO) [Avibacterium paragallinarum strain npAP/GA-USA/20231216/S1-1]
MYRRYVKGQSLLSLMLSISLSSFLLIIIFSFYTYSQKQNQEMRMQLYLQNEIERVLQLMAKDLRRSGFRAVTEKLQVSNF
PFFELDDKGTSVLISQASGEAMGSCVLFFYDLDSSGCIGSTYTKGLCIQNGKNQVREIERELFGYRLNKKMLETRLTYKN
TVNQECSQEQCRTYTQQPACEKGGWVDLFDNKEIAISQFFLQWIKEGELIEAHLMGYLVKQPHIQYKSHIVIPLLNQGR

Nucleotide


Download         Length: 720 bp        

>NTDB_id=957774 ACIRXL_RS07300 WP_264245430.1 1478957..1479676(-) (comO) [Avibacterium paragallinarum strain npAP/GA-USA/20231216/S1-1]
ATGTATCGTCGTTATGTTAAAGGGCAGAGTTTATTGTCTTTAATGCTTTCTATTTCTTTATCTTCTTTCTTATTAATCAT
TATTTTTTCTTTTTATACCTATAGCCAAAAGCAAAACCAAGAAATGCGAATGCAATTATATTTACAAAATGAAATTGAAC
GCGTGCTTCAATTAATGGCGAAAGATTTACGGCGTTCTGGATTTCGGGCGGTTACAGAAAAACTGCAAGTTTCCAATTTT
CCTTTTTTTGAATTGGATGACAAAGGAACAAGCGTATTGATTAGCCAAGCTTCAGGGGAGGCGATGGGAAGTTGTGTACT
TTTTTTCTATGATTTAGATAGTTCTGGCTGTATTGGCTCAACTTATACCAAAGGGCTTTGCATTCAAAATGGAAAAAATC
AAGTAAGAGAGATTGAACGTGAGTTATTTGGTTATCGCTTAAATAAAAAAATGTTAGAAACCCGTTTAACTTATAAAAAT
ACGGTAAATCAGGAATGTTCTCAAGAACAATGTCGAACTTATACTCAGCAACCTGCATGCGAAAAAGGAGGATGGGTGGA
TTTATTTGATAACAAAGAAATTGCCATTTCTCAGTTTTTCTTACAATGGATAAAAGAAGGAGAATTAATTGAAGCCCATC
TTATGGGATATTTAGTCAAACAACCGCATATCCAGTATAAAAGCCATATTGTTATTCCATTGCTTAATCAAGGTCGCTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Haemophilus influenzae Rd KW20

47.059

99.582

0.469