Detailed information    

insolico Bioinformatically predicted

Overview

Name   comQ   Type   Machinery gene
Locus tag   ACIRXL_RS07290 Genome accession   NZ_CP173236
Coordinates   1478004..1478309 (-) Length   101 a.a.
NCBI ID   WP_017806953.1    Uniprot ID   A0A0F5EWR5
Organism   Avibacterium paragallinarum strain npAP/GA-USA/20231216/S1-1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1473004..1483309
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIRXL_RS07275 (ACIRXL_07275) araD 1473009..1473704 (+) 696 WP_410680857.1 L-ribulose-5-phosphate 4-epimerase -
  ACIRXL_RS07280 (ACIRXL_07280) - 1473732..1474550 (+) 819 WP_410680855.1 pyridoxal phosphatase -
  ACIRXL_RS07285 (ACIRXL_07285) recC 1474588..1477992 (-) 3405 WP_410680853.1 exodeoxyribonuclease V subunit gamma -
  ACIRXL_RS07290 (ACIRXL_07290) comQ 1478004..1478309 (-) 306 WP_017806953.1 DUF5374 domain-containing protein Machinery gene
  ACIRXL_RS07295 (ACIRXL_07295) - 1478290..1478955 (-) 666 WP_410680851.1 DUF2572 family protein -
  ACIRXL_RS07300 (ACIRXL_07300) comO 1478957..1479676 (-) 720 WP_264245430.1 hypothetical protein Machinery gene
  ACIRXL_RS07305 (ACIRXL_07305) comN 1479678..1480199 (-) 522 WP_410680849.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  ACIRXL_RS07325 (ACIRXL_07325) pal 1480839..1481291 (-) 453 WP_264256501.1 peptidoglycan-associated lipoprotein Pal -
  ACIRXL_RS07330 (ACIRXL_07330) tolB 1481302..1482591 (-) 1290 WP_410681049.1 Tol-Pal system beta propeller repeat protein TolB -

Sequence

Protein


Download         Length: 101 a.a.        Molecular weight: 11774.67 Da        Isoelectric Point: 10.1103

>NTDB_id=957773 ACIRXL_RS07290 WP_017806953.1 1478004..1478309(-) (comQ) [Avibacterium paragallinarum strain npAP/GA-USA/20231216/S1-1]
MILKPYRLLKYKGMNLFSLLVTLTLFSGIFLSVNQWLSHQRQSAVRIFQDLQAWSIANNQQQRRLMGLDCQSQIEQNHII
FHISCDGNQVTVHYPTGNVRL

Nucleotide


Download         Length: 306 bp        

>NTDB_id=957773 ACIRXL_RS07290 WP_017806953.1 1478004..1478309(-) (comQ) [Avibacterium paragallinarum strain npAP/GA-USA/20231216/S1-1]
ATGATTTTGAAACCTTATAGATTGTTAAAATATAAAGGAATGAATTTGTTTTCTTTGCTGGTGACTTTAACGTTGTTTAG
TGGTATTTTTCTTTCCGTTAATCAGTGGCTTTCACATCAGCGACAAAGTGCGGTGAGAATTTTCCAAGATTTACAAGCTT
GGTCTATTGCAAATAATCAACAGCAGCGTCGGCTTATGGGGCTAGATTGCCAGTCTCAAATTGAACAGAACCACATTATT
TTCCATATTTCTTGCGATGGAAATCAAGTTACAGTGCATTATCCCACTGGGAATGTACGTTTATAA

Domains

Predicted by InterProScan.

Family of unknown function (DUF5374) (DUF5374)

(62-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0F5EWR5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comQ Haemophilus influenzae Rd KW20

45.455

87.129

0.396