Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   ACIRXL_RS00240 Genome accession   NZ_CP173236
Coordinates   48782..50614 (-) Length   610 a.a.
NCBI ID   WP_410680141.1    Uniprot ID   -
Organism   Avibacterium paragallinarum strain npAP/GA-USA/20231216/S1-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 43782..55614
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIRXL_RS00215 (ACIRXL_00215) - 45924..46619 (-) 696 WP_110479462.1 molecular chaperone -
  ACIRXL_RS00220 (ACIRXL_00220) - 46696..47256 (-) 561 WP_410680145.1 fimbrial protein -
  ACIRXL_RS00225 (ACIRXL_00225) - 47296..47430 (+) 135 WP_410683629.1 hypothetical protein -
  ACIRXL_RS00230 (ACIRXL_00230) rplY 47597..47884 (-) 288 WP_410680143.1 50S ribosomal protein L25 -
  ACIRXL_RS00235 (ACIRXL_00235) - 48125..48733 (+) 609 WP_410680142.1 DedA family protein -
  ACIRXL_RS00240 (ACIRXL_00240) uvrC 48782..50614 (-) 1833 WP_410680141.1 excinuclease ABC subunit UvrC Machinery gene
  ACIRXL_RS00245 (ACIRXL_00245) - 50938..51651 (+) 714 WP_035695912.1 ABC transporter ATP-binding protein -
  ACIRXL_RS00250 (ACIRXL_00250) - 51651..52406 (+) 756 WP_410680140.1 ABC transporter permease -
  ACIRXL_RS00255 (ACIRXL_00255) - 52415..53359 (+) 945 WP_264246246.1 ABC transporter substrate-binding protein -
  ACIRXL_RS00260 (ACIRXL_00260) kdsB 53814..54596 (-) 783 WP_410680139.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  ACIRXL_RS00265 (ACIRXL_00265) - 54593..54775 (-) 183 WP_410680138.1 Trm112 family protein -

Sequence

Protein


Download         Length: 610 a.a.        Molecular weight: 69082.08 Da        Isoelectric Point: 9.6445

>NTDB_id=957743 ACIRXL_RS00240 WP_410680141.1 48782..50614(-) (uvrC) [Avibacterium paragallinarum strain npAP/GA-USA/20231216/S1-1]
MTFNPKQFLANVPQSPGVYRMYDAKDQVIYVGKAKDLKKRLSSYFRRNVSSKKTEALVAAIHRIETTITSSETEALLLEH
NYIKTYQPRYNVLLRDDKSYPYILLTKERHPRITAYRGSKKIQGEYFGPYPNVGAVRETLSLLQKLFPVRQCENSVYRNR
SRPCLQYQIERCSAPCVAGYISDEDYQQQVNFARLFLQGKDQQVLDHLVAKMEQASQGLNFEEAARIRDQIQAVRAVIEK
QFVSNDRLDDIDIIAIAYQLGIACVQVLFIRQGKILGNRSYFPKVPANTDLSELTATFVGQFYLQAHQGRSVPNSIIVDH
KLAEKAQLESLLSEQAGRKVQIQDSAKGEKSKYLQLAQMNAQAALVTQLKQSTLINERYQALQDLLGVEKIQRMECFDIS
HTMGEQTIASCVVFNQDGPLKSDYRRFNITGITGGDDYAAMEQALLKRYDKDLDAEKIPDVIFIDGGKGQLNRALQVFQQ
LNVKWDKKRPHLIGVAKGVDRRAGLETLIISKQDREINLPPDSLALHLIQHIRDESHNHAISGHRKKRQKAFTQSGLETI
EGVGAKRRQALLKYLGGMQGVKKASLDEIASVPGISQSLAEKIFETMRGD

Nucleotide


Download         Length: 1833 bp        

>NTDB_id=957743 ACIRXL_RS00240 WP_410680141.1 48782..50614(-) (uvrC) [Avibacterium paragallinarum strain npAP/GA-USA/20231216/S1-1]
ATGACTTTTAACCCTAAACAATTTCTGGCTAATGTACCGCAATCGCCTGGTGTTTATCGAATGTATGATGCGAAGGATCA
GGTGATCTATGTGGGCAAAGCGAAAGATTTAAAAAAACGCCTGTCAAGCTATTTTCGCCGCAATGTATCGAGCAAAAAAA
CGGAAGCCTTAGTGGCCGCTATTCATCGCATTGAAACCACCATCACTTCAAGCGAAACGGAAGCCTTGCTACTCGAGCAT
AACTACATCAAAACCTACCAACCGCGTTATAACGTATTGTTGCGTGATGATAAATCTTACCCCTACATTCTTCTCACCAA
AGAACGCCACCCCAGAATTACCGCTTACCGTGGTAGTAAGAAAATTCAGGGGGAATATTTTGGACCTTATCCCAATGTGG
GGGCGGTGCGGGAAACTCTATCATTATTACAAAAATTATTCCCCGTGAGACAATGTGAAAACTCGGTGTATCGCAACCGC
TCACGCCCTTGTTTGCAATATCAAATTGAGCGTTGCTCCGCCCCTTGTGTAGCGGGCTATATTTCTGATGAGGATTACCA
ACAGCAAGTGAATTTCGCCCGTCTTTTTTTGCAAGGCAAGGATCAACAAGTGCTGGATCACCTTGTCGCCAAAATGGAAC
AAGCGAGCCAAGGGTTAAATTTTGAAGAGGCGGCACGCATTCGTGATCAAATTCAAGCGGTGCGAGCGGTGATAGAAAAA
CAATTCGTCAGCAATGATCGCCTTGATGACATTGATATTATCGCCATTGCCTACCAACTGGGCATCGCTTGCGTACAAGT
GCTGTTTATTCGACAAGGCAAGATTTTGGGCAACCGTAGTTATTTTCCAAAAGTGCCAGCCAATACGGATTTATCTGAAC
TCACCGCCACCTTTGTCGGACAGTTTTATTTACAGGCTCATCAAGGGCGAAGCGTGCCGAACAGCATTATTGTGGATCAC
AAACTCGCGGAAAAAGCCCAGCTAGAAAGCCTGTTATCAGAGCAAGCGGGACGAAAAGTGCAGATTCAAGACAGTGCCAA
AGGGGAAAAAAGCAAATATTTGCAACTGGCACAAATGAACGCCCAAGCGGCGTTGGTTACTCAACTGAAACAATCCACGC
TGATTAACGAACGTTATCAAGCGTTGCAAGATTTGCTTGGCGTTGAAAAAATCCAACGAATGGAATGTTTTGACATCAGC
CACACAATGGGCGAACAAACCATCGCTTCTTGCGTGGTGTTTAATCAAGATGGGCCGCTAAAATCTGATTATCGCCGTTT
TAATATTACGGGCATCACGGGCGGTGATGATTATGCGGCAATGGAGCAAGCTTTATTGAAACGCTATGATAAAGATCTGG
ACGCAGAAAAAATTCCTGATGTGATCTTTATTGACGGCGGTAAAGGACAGCTTAACCGAGCCTTACAAGTGTTCCAACAG
CTCAATGTAAAATGGGACAAAAAAAGACCGCACTTAATTGGTGTGGCGAAAGGTGTGGATCGCCGTGCAGGCCTAGAAAC
ACTCATCATCAGCAAGCAAGATCGCGAAATTAATTTACCGCCGGATAGCCTTGCCTTGCATTTAATTCAGCATATCCGTG
ACGAAAGCCATAACCACGCCATTAGCGGACACCGCAAAAAACGCCAAAAAGCTTTCACCCAAAGCGGATTAGAAACCATT
GAAGGGGTGGGGGCTAAACGTCGTCAAGCCTTATTGAAATATCTTGGTGGAATGCAAGGCGTGAAAAAAGCGAGCCTTGA
TGAAATTGCATCTGTTCCTGGCATTTCTCAATCTCTTGCAGAAAAAATTTTTGAAACAATGCGAGGGGATTAA

Domains

Predicted by InterProScan.

GIY-YIG catalytic domain (GIY-YIG)

(17-91)

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(384-541)

UvrB/uvrC motif (UVR)

(203-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Streptococcus pneumoniae TIGR4

37.708

98.689

0.372
  uvrC Streptococcus pneumoniae R6

37.375

98.689

0.369
  uvrC Streptococcus pneumoniae D39

37.375

98.689

0.369