Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   ACIRXM_RS10510 Genome accession   NZ_CP173234
Coordinates   2140724..2142556 (-) Length   610 a.a.
NCBI ID   WP_410686368.1    Uniprot ID   -
Organism   Avibacterium paragallinarum strain npAP/NC-USA/20240110/S1-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2135724..2147556
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIRXM_RS10490 (ACIRXM_10495) - 2137874..2138569 (-) 696 WP_110479462.1 molecular chaperone -
  ACIRXM_RS10495 (ACIRXM_10500) - 2138646..2139206 (-) 561 WP_410680145.1 fimbrial protein -
  ACIRXM_RS10500 (ACIRXM_10505) rplY 2139539..2139826 (-) 288 WP_017805712.1 50S ribosomal protein L25 -
  ACIRXM_RS10505 (ACIRXM_10510) - 2140067..2140675 (+) 609 WP_410686366.1 DedA family protein -
  ACIRXM_RS10510 (ACIRXM_10515) uvrC 2140724..2142556 (-) 1833 WP_410686368.1 excinuclease ABC subunit UvrC Machinery gene
  ACIRXM_RS10515 (ACIRXM_10520) - 2142880..2143593 (+) 714 WP_410687911.1 ABC transporter ATP-binding protein -
  ACIRXM_RS10520 (ACIRXM_10525) - 2143593..2144348 (+) 756 WP_410686370.1 ABC transporter permease -
  ACIRXM_RS10525 (ACIRXM_10530) - 2144357..2145301 (+) 945 WP_410686371.1 ABC transporter substrate-binding protein -
  ACIRXM_RS10530 (ACIRXM_10535) - 2145530..2145661 (+) 132 WP_410686373.1 hypothetical protein -
  ACIRXM_RS10535 (ACIRXM_10540) kdsB 2145727..2146509 (-) 783 WP_410686376.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  ACIRXM_RS10540 (ACIRXM_10545) - 2146506..2146688 (-) 183 WP_035685738.1 Trm112 family protein -

Sequence

Protein


Download         Length: 610 a.a.        Molecular weight: 69094.18 Da        Isoelectric Point: 9.6930

>NTDB_id=957734 ACIRXM_RS10510 WP_410686368.1 2140724..2142556(-) (uvrC) [Avibacterium paragallinarum strain npAP/NC-USA/20240110/S1-1]
MTFNPKQFLANVPQSPGVYRMYDAKDQVIYVGKAKDLKKRLASYFRRNVSSKKTEALVAAIHRIETTITSSETEALLLEH
NYIKTYQPRYNVLLRDDKSYPYILLTKERHPRITAYRGSKKIQGEYFGPYPNVGAVRETLSLLQKLFPVRQCENSVYRNR
SRPCLQYQIERCSAPCVAGYISDEDYQQQVNFARLFLQGKDQQVLDHLVAKMEQASQGLNFEEAARIRDQIQAVRAVIEK
QFVSNDRLDDIDIIAIAYQLGIACVQVLFIRQGKILGNRSYFPKVPANTDLSELTATFVGQFYLQAHQGRSVPNSIIVDH
KLAEKAQLESLLSEQAGRKVQIQDSAKGEKSKYLQLAQMNAQAALVTQLKQSTLINERYQALQDLLGIEKIQRMECFDIS
HTMGEQTIASCVVFNQDGPLKSDYRRFNITGITGGDDYAAMEQALLKRYDKDLDAEKIPDVIFIDGGKGQLNRALQVFQQ
LKVKWDKKRPHLIGVAKGVDRRAGLETLIISKQDREINLPPDSLALHLIQHIRDESHNHAISGHRKKRQKAFTQSGLETI
EGVGAKRRQALLKYLGGMQGVKKASLDEIASVPGISQSLAEKIFETMRGD

Nucleotide


Download         Length: 1833 bp        

>NTDB_id=957734 ACIRXM_RS10510 WP_410686368.1 2140724..2142556(-) (uvrC) [Avibacterium paragallinarum strain npAP/NC-USA/20240110/S1-1]
ATGACTTTTAACCCTAAACAATTTCTGGCTAATGTGCCGCAATCGCCAGGTGTCTATCGAATGTATGACGCAAAGGATCA
GGTGATCTATGTGGGCAAAGCGAAAGATTTAAAAAAACGCCTAGCGAGCTATTTCCGTCGCAATGTATCGAGCAAAAAAA
CGGAAGCCTTAGTGGCAGCCATTCATCGCATTGAAACCACCATCACTTCAAGCGAAACGGAAGCCTTGCTACTCGAGCAT
AATTACATCAAAACCTACCAACCGCGTTATAACGTATTGTTGCGTGATGATAAATCTTACCCCTACATTCTTCTCACCAA
AGAACGCCACCCCAGAATTACCGCTTATCGTGGTAGTAAGAAAATTCAGGGGGAATATTTTGGACCTTATCCCAATGTGG
GGGCGGTGCGGGAAACCCTATCATTATTACAAAAATTATTCCCCGTGCGACAATGTGAAAACTCGGTGTATCGCAACCGC
TCACGCCCTTGTTTGCAATATCAAATTGAGCGTTGCTCCGCCCCTTGTGTAGCAGGCTATATTTCTGATGAGGATTACCA
ACAGCAAGTGAATTTCGCTCGCCTTTTTTTGCAAGGCAAGGATCAACAAGTGCTGGATCACCTTGTCGCCAAAATGGAAC
AAGCGAGCCAAGGGTTAAATTTTGAAGAGGCGGCACGCATTCGTGATCAAATTCAAGCGGTGCGAGCGGTAATCGAAAAA
CAATTCGTCAGCAATGATCGTCTTGATGATATTGATATTATCGCCATTGCCTACCAACTGGGCATCGCTTGCGTACAAGT
GCTGTTTATTCGACAAGGCAAGATTTTGGGCAACCGTAGCTATTTTCCAAAAGTGCCAGCCAATACGGATTTATCCGAAC
TCACCGCCACCTTTGTCGGACAGTTTTATTTACAGGCTCATCAAGGGCGAAGCGTGCCGAACAGCATTATTGTGGATCAC
AAACTCGCGGAAAAAGCCCAGCTAGAAAGCCTGTTATCAGAGCAAGCGGGGCGAAAAGTGCAGATTCAAGACAGTGCCAA
AGGGGAAAAAAGCAAATATTTGCAACTGGCACAAATGAACGCCCAAGCGGCGTTGGTTACTCAACTGAAACAATCCACGC
TGATTAACGAACGTTATCAAGCGTTGCAAGATTTGCTCGGTATTGAAAAAATCCAACGAATGGAGTGCTTTGACATCAGC
CACACAATGGGCGAACAAACTATCGCTTCTTGTGTGGTGTTTAATCAAGATGGGCCGCTAAAATCTGATTATCGCCGTTT
TAATATTACGGGCATCACGGGGGGCGATGATTATGCTGCAATGGAACAAGCCTTATTGAAACGCTATGATAAAGATCTGG
ACGCAGAAAAAATTCCTGATGTGATCTTTATTGACGGCGGTAAAGGACAGCTTAACCGAGCCTTACAAGTGTTCCAACAG
CTCAAGGTAAAATGGGACAAAAAACGACCGCACTTAATTGGTGTGGCGAAAGGTGTGGATCGCCGTGCTGGCCTAGAAAC
ACTCATCATCAGCAAGCAAGATCGCGAAATTAATTTACCGCCGGATAGCCTTGCCTTGCATTTAATTCAGCATATCCGTG
ATGAAAGTCATAATCACGCCATCAGCGGACACCGCAAAAAACGGCAAAAAGCCTTCACGCAAAGCGGATTAGAAACCATT
GAAGGGGTGGGTGCTAAACGTCGTCAAGCCCTATTGAAATACCTTGGCGGAATGCAAGGCGTGAAAAAAGCGAGCCTTGA
TGAAATTGCATCCGTTCCTGGCATTTCTCAATCTCTTGCAGAAAAAATTTTTGAAACAATGCGAGGCGATTAA

Domains

Predicted by InterProScan.

GIY-YIG catalytic domain (GIY-YIG)

(17-91)

UvrB/uvrC motif (UVR)

(203-236)

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(384-541)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Streptococcus pneumoniae TIGR4

37.937

98.525

0.374
  uvrC Streptococcus pneumoniae R6

37.604

98.525

0.37
  uvrC Streptococcus pneumoniae D39

37.604

98.525

0.37