Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   ACIRXM_RS01520 Genome accession   NZ_CP173234
Coordinates   276874..277593 (+) Length   239 a.a.
NCBI ID   WP_410686959.1    Uniprot ID   -
Organism   Avibacterium paragallinarum strain npAP/NC-USA/20240110/S1-1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 271874..282593
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIRXM_RS01480 (ACIRXM_01485) tolR 272317..272739 (+) 423 WP_046098639.1 colicin uptake protein TolR -
  ACIRXM_RS01485 (ACIRXM_01490) tolA 272756..273907 (+) 1152 WP_410686956.1 cell envelope integrity protein TolA -
  ACIRXM_RS01490 (ACIRXM_01495) tolB 273959..275248 (+) 1290 WP_410687936.1 Tol-Pal system beta propeller repeat protein TolB -
  ACIRXM_RS01495 (ACIRXM_01500) pal 275259..275711 (+) 453 WP_017806949.1 peptidoglycan-associated lipoprotein Pal -
  ACIRXM_RS01515 (ACIRXM_01520) comN 276351..276872 (+) 522 WP_017806950.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  ACIRXM_RS01520 (ACIRXM_01525) comO 276874..277593 (+) 720 WP_410686959.1 hypothetical protein Machinery gene
  ACIRXM_RS01525 (ACIRXM_01530) - 277595..278260 (+) 666 WP_410686961.1 DUF2572 family protein -
  ACIRXM_RS01530 (ACIRXM_01535) comQ 278241..278546 (+) 306 WP_017806953.1 DUF5374 domain-containing protein Machinery gene
  ACIRXM_RS01535 (ACIRXM_01540) recC 278558..281962 (+) 3405 WP_410683295.1 exodeoxyribonuclease V subunit gamma -

Sequence

Protein


Download         Length: 239 a.a.        Molecular weight: 27840.21 Da        Isoelectric Point: 8.6604

>NTDB_id=957699 ACIRXM_RS01520 WP_410686959.1 276874..277593(+) (comO) [Avibacterium paragallinarum strain npAP/NC-USA/20240110/S1-1]
MYRRYVKGQSLLSLMLSISLSSFLLIIIFSFYTYSQKQNQEMRMQLYLQNEIERVLQLMAKDLRRSGFRAVTEKLQVSNF
PFFELDDKGTSVLISQVSGKPLGSCVLFFYDLDSSGCIGSTYTKGLCIQDGKNQVREIERELFGYRLNKKMLETRLTYKN
TVNQECSQEQCRTYTQQPACEKGGWVDLFDNKEIAISQFFLQWLKEGELIEAHLMGYLVKQPHIQYKSHIVIPLLNQGR

Nucleotide


Download         Length: 720 bp        

>NTDB_id=957699 ACIRXM_RS01520 WP_410686959.1 276874..277593(+) (comO) [Avibacterium paragallinarum strain npAP/NC-USA/20240110/S1-1]
ATGTATCGTCGTTATGTTAAAGGGCAGAGTTTATTGTCTTTAATGCTTTCTATTTCTTTATCTTCTTTCTTATTAATCAT
TATTTTTTCTTTTTATACCTATAGCCAAAAGCAAAACCAAGAAATGCGAATGCAATTATATTTACAAAATGAAATTGAAC
GCGTGCTTCAATTAATGGCGAAAGATTTACGGCGTTCTGGATTTCGGGCGGTTACAGAAAAACTGCAAGTTTCCAATTTT
CCTTTTTTTGAATTGGATGACAAAGGAACAAGCGTATTGATTAGCCAAGTTTCAGGGAAGCCACTGGGAAGTTGTGTACT
TTTTTTCTATGATTTAGATAGTTCTGGCTGTATTGGCTCAACTTATACCAAAGGGCTTTGCATTCAAGATGGAAAAAATC
AAGTAAGAGAGATTGAACGTGAGTTATTTGGTTATCGCTTAAATAAAAAAATGTTAGAAACCCGTTTAACTTATAAAAAT
ACGGTAAATCAGGAATGTTCTCAAGAACAATGTCGAACTTATACTCAGCAACCTGCATGCGAAAAAGGAGGATGGGTGGA
TTTATTTGATAACAAAGAAATTGCCATTTCTCAGTTTTTCTTACAATGGCTAAAAGAAGGAGAATTAATTGAAGCCCATC
TTATGGGATATTTAGTCAAACAACCGCATATCCAGTATAAAAGCCATATTGTTATTCCATTGCTTAATCAAGGTCGCTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Haemophilus influenzae Rd KW20

47.899

99.582

0.477