Detailed information    

insolico Bioinformatically predicted

Overview

Name   comQ   Type   Machinery gene
Locus tag   ACIRXM_RS01530 Genome accession   NZ_CP173234
Coordinates   278241..278546 (+) Length   101 a.a.
NCBI ID   WP_017806953.1    Uniprot ID   A0A0F5EWR5
Organism   Avibacterium paragallinarum strain npAP/NC-USA/20240110/S1-1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 273241..283546
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIRXM_RS01490 (ACIRXM_01495) tolB 273959..275248 (+) 1290 WP_410687936.1 Tol-Pal system beta propeller repeat protein TolB -
  ACIRXM_RS01495 (ACIRXM_01500) pal 275259..275711 (+) 453 WP_017806949.1 peptidoglycan-associated lipoprotein Pal -
  ACIRXM_RS01515 (ACIRXM_01520) comN 276351..276872 (+) 522 WP_017806950.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  ACIRXM_RS01520 (ACIRXM_01525) comO 276874..277593 (+) 720 WP_410686959.1 hypothetical protein Machinery gene
  ACIRXM_RS01525 (ACIRXM_01530) - 277595..278260 (+) 666 WP_410686961.1 DUF2572 family protein -
  ACIRXM_RS01530 (ACIRXM_01535) comQ 278241..278546 (+) 306 WP_017806953.1 DUF5374 domain-containing protein Machinery gene
  ACIRXM_RS01535 (ACIRXM_01540) recC 278558..281962 (+) 3405 WP_410683295.1 exodeoxyribonuclease V subunit gamma -
  ACIRXM_RS01540 (ACIRXM_01545) - 282000..282818 (-) 819 WP_410683294.1 pyridoxal phosphatase -
  ACIRXM_RS01545 (ACIRXM_01550) araD 282846..283541 (-) 696 WP_410686963.1 L-ribulose-5-phosphate 4-epimerase -

Sequence

Protein


Download         Length: 101 a.a.        Molecular weight: 11774.67 Da        Isoelectric Point: 10.1103

>NTDB_id=957700 ACIRXM_RS01530 WP_017806953.1 278241..278546(+) (comQ) [Avibacterium paragallinarum strain npAP/NC-USA/20240110/S1-1]
MILKPYRLLKYKGMNLFSLLVTLTLFSGIFLSVNQWLSHQRQSAVRIFQDLQAWSIANNQQQRRLMGLDCQSQIEQNHII
FHISCDGNQVTVHYPTGNVRL

Nucleotide


Download         Length: 306 bp        

>NTDB_id=957700 ACIRXM_RS01530 WP_017806953.1 278241..278546(+) (comQ) [Avibacterium paragallinarum strain npAP/NC-USA/20240110/S1-1]
ATGATTTTGAAACCTTATAGATTGTTAAAATATAAAGGAATGAATTTGTTTTCTTTGCTGGTGACTTTAACGTTGTTTAG
TGGTATTTTTCTTTCCGTTAATCAGTGGCTTTCACATCAACGACAAAGTGCGGTGAGAATTTTCCAAGATTTACAAGCTT
GGTCTATTGCCAATAATCAACAGCAGCGTCGGCTTATGGGGCTAGATTGCCAGTCTCAAATTGAACAGAACCACATTATT
TTCCATATTTCTTGCGATGGAAATCAAGTTACAGTGCATTATCCCACTGGGAATGTACGTTTATAA

Domains

Predicted by InterProScan.

Family of unknown function (DUF5374) (DUF5374)

(62-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0F5EWR5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comQ Haemophilus influenzae Rd KW20

45.455

87.129

0.396