Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   ACIO08_RS08685 Genome accession   NZ_CP173233
Coordinates   1783557..1784807 (+) Length   416 a.a.
NCBI ID   WP_264256535.1    Uniprot ID   -
Organism   Avibacterium paragallinarum strain npAP/OH-USA/20230213/S1-2     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1778557..1789807
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIO08_RS08660 (ACIO08_08660) - 1779617..1779967 (+) 351 WP_410678005.1 DUF305 domain-containing protein -
  ACIO08_RS08665 (ACIO08_08665) - 1780127..1780483 (+) 357 Protein_1669 DNA-processing protein DprA -
  ACIO08_RS08670 (ACIO08_08670) - 1780487..1781038 (-) 552 Protein_1670 BCCT family transporter -
  ACIO08_RS08675 (ACIO08_08675) tig 1781546..1782844 (+) 1299 WP_264256532.1 trigger factor -
  ACIO08_RS08680 (ACIO08_08680) clpP 1782963..1783553 (+) 591 WP_264256534.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  ACIO08_RS08685 (ACIO08_08685) clpX 1783557..1784807 (+) 1251 WP_264256535.1 ATP-dependent protease ATP-binding subunit ClpX Regulator
  ACIO08_RS08690 (ACIO08_08690) aspA 1785030..1786457 (+) 1428 WP_110479872.1 aspartate ammonia-lyase -
  ACIO08_RS08695 (ACIO08_08695) - 1786548..1788344 (-) 1797 WP_264256537.1 AMP-dependent synthetase/ligase -
  ACIO08_RS08700 (ACIO08_08700) rimI 1788505..1788948 (-) 444 WP_264245499.1 ribosomal protein S18-alanine N-acetyltransferase -
  ACIO08_RS08705 (ACIO08_08705) - 1788950..1789360 (-) 411 WP_264256540.1 DNA polymerase III subunit psi -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45831.46 Da        Isoelectric Point: 4.7945

>NTDB_id=957675 ACIO08_RS08685 WP_264256535.1 1783557..1784807(+) (clpX) [Avibacterium paragallinarum strain npAP/OH-USA/20230213/S1-2]
MTTEQQLHCSICGNDRSQVKKLISGVEGAICNECIERCHNFLVEAEQQTAETQEESEQQTEQVALPTPHQIRAHLDDYVI
GQDYAKKVLAVAVYNHYKRQQAGYKADDVELGKSNILLIGPTGSGKTLLAETLARMLNVPFAMADATTLTEAGYVGEDVE
NVLQKLLQNCDYDVEKAEKGIIYIDEIDKITRKSENPSITRDVSGEGVQQALLKLVEGTIASIPPQGGRKHPQQEMLRLD
TSKILFICGGAFAGLDKIIEKRVHVGSGIGFGAEVKGESDKATLTELFAQVEPDDLMKFGLIPEFIGRLPVIAPLAELDE
EALIQILTEPKNALTKQYQVLFNLENVKLEFTHAALVAMAKQALERKTGARGLRSIVEGLLLDTMYDLPSLKNVEKVIIE
ESTVTKNQAPQIIYKS

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=957675 ACIO08_RS08685 WP_264256535.1 1783557..1784807(+) (clpX) [Avibacterium paragallinarum strain npAP/OH-USA/20230213/S1-2]
ATGACAACAGAACAACAACTCCATTGCTCTATTTGCGGTAATGACCGTAGCCAAGTAAAAAAACTTATTTCTGGCGTAGA
AGGTGCAATTTGTAATGAATGTATTGAACGTTGCCATAATTTTTTAGTTGAAGCGGAGCAGCAAACAGCGGAAACTCAGG
AAGAAAGTGAGCAACAAACAGAACAGGTGGCATTACCTACGCCTCATCAAATTCGTGCGCATTTAGATGATTATGTTATT
GGGCAAGACTACGCCAAAAAAGTGCTTGCCGTTGCGGTGTATAATCATTACAAACGCCAACAGGCGGGCTATAAGGCTGA
CGATGTGGAACTAGGTAAAAGTAATATTTTGCTCATTGGTCCAACGGGAAGCGGAAAAACCCTATTGGCAGAAACCCTAG
CTAGAATGCTGAATGTGCCTTTTGCAATGGCTGATGCAACCACACTCACCGAAGCGGGTTATGTTGGTGAAGATGTAGAA
AATGTGCTACAAAAACTTTTGCAAAATTGCGATTATGACGTGGAAAAAGCAGAAAAAGGCATTATTTACATTGATGAAAT
TGACAAAATTACGCGGAAATCAGAGAACCCATCTATTACTCGCGATGTATCAGGCGAGGGCGTTCAGCAAGCCTTACTTA
AATTAGTAGAGGGAACGATTGCGTCAATCCCACCACAAGGTGGACGCAAACACCCACAACAAGAGATGTTACGCCTTGAT
ACATCAAAAATTCTCTTTATCTGCGGCGGGGCTTTCGCGGGGTTAGATAAAATCATTGAAAAACGCGTACATGTAGGTAG
TGGTATCGGCTTTGGAGCAGAAGTGAAAGGAGAATCAGATAAAGCTACCTTGACGGAACTATTTGCCCAAGTTGAACCTG
ATGATTTAATGAAATTTGGTTTAATCCCTGAATTTATCGGGCGTTTACCCGTGATAGCACCATTAGCCGAGCTTGATGAA
GAAGCCTTAATCCAAATTCTGACCGAACCGAAAAATGCACTTACTAAGCAATATCAAGTGCTATTCAACCTTGAAAATGT
GAAGTTAGAATTTACCCACGCTGCCCTCGTGGCAATGGCAAAACAGGCGTTGGAAAGAAAAACGGGGGCGAGGGGATTGC
GTTCTATCGTAGAGGGATTGTTGCTTGATACGATGTACGATCTTCCTTCATTGAAAAATGTCGAGAAGGTAATCATTGAA
GAGAGTACGGTAACAAAAAACCAAGCTCCACAGATAATATATAAATCGTAA

Domains

Predicted by InterProScan.

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(318-395)

ClpX C4-type zinc finger (zf-C4_ClpX)

(7-42)

AAA domain (Cdc48 subfamily) (AAA_2)

(113-312)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

56.659

99.279

0.563
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

53.902

98.558

0.531