Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   ACIO08_RS08390 Genome accession   NZ_CP173233
Coordinates   1726867..1727586 (-) Length   239 a.a.
NCBI ID   WP_264256499.1    Uniprot ID   -
Organism   Avibacterium paragallinarum strain npAP/OH-USA/20230213/S1-2     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1721867..1732586
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIO08_RS08375 (ACIO08_08375) recC 1722498..1725902 (-) 3405 WP_410677982.1 exodeoxyribonuclease V subunit gamma -
  ACIO08_RS08380 (ACIO08_08380) comQ 1725914..1726219 (-) 306 WP_017806953.1 DUF5374 domain-containing protein Machinery gene
  ACIO08_RS08385 (ACIO08_08385) - 1726200..1726865 (-) 666 WP_264256498.1 DUF2572 family protein -
  ACIO08_RS08390 (ACIO08_08390) comO 1726867..1727586 (-) 720 WP_264256499.1 hypothetical protein Machinery gene
  ACIO08_RS08395 (ACIO08_08395) comN 1727587..1728108 (-) 522 WP_264256500.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  ACIO08_RS08415 (ACIO08_08415) pal 1728748..1729200 (-) 453 WP_264256501.1 peptidoglycan-associated lipoprotein Pal -
  ACIO08_RS08420 (ACIO08_08420) tolB 1729211..1730500 (-) 1290 WP_264256502.1 Tol-Pal system beta propeller repeat protein TolB -
  ACIO08_RS08425 (ACIO08_08425) tolA 1730552..1731757 (-) 1206 WP_410677984.1 cell envelope integrity protein TolA -
  ACIO08_RS08430 (ACIO08_08430) tolR 1731774..1732196 (-) 423 WP_046098639.1 colicin uptake protein TolR -

Sequence

Protein


Download         Length: 239 a.a.        Molecular weight: 27833.14 Da        Isoelectric Point: 8.2091

>NTDB_id=957672 ACIO08_RS08390 WP_264256499.1 1726867..1727586(-) (comO) [Avibacterium paragallinarum strain npAP/OH-USA/20230213/S1-2]
MYRRYVKGQSLLSLMLSISLSSFLLIIIFSFYTYSQKQNQEMRMQLYLQNEIERVLQLMAKDLRRSGFRAVTEKLQVSNF
PFFELDDKGTSVLISQVSGEAMGSCVLFFYDLDSSGCIGSTYTKGLCIQDGKNQVREIERELFGYRLNKKMLETRLTYKN
TVNQECSQEQCRTYTQQPACEKGGWVDLFDNKEIAISQFFLQWLKEGELIEAHLMGYLVKQPHIQYKSHIVIPLLNQGR

Nucleotide


Download         Length: 720 bp        

>NTDB_id=957672 ACIO08_RS08390 WP_264256499.1 1726867..1727586(-) (comO) [Avibacterium paragallinarum strain npAP/OH-USA/20230213/S1-2]
ATGTATCGTCGTTATGTTAAAGGGCAGAGTTTATTGTCTTTAATGCTTTCTATTTCTTTATCTTCTTTCTTATTAATCAT
TATTTTTTCTTTTTATACCTATAGCCAAAAGCAAAACCAAGAAATGCGAATGCAATTATATTTACAAAATGAAATTGAAC
GCGTACTTCAATTAATGGCGAAAGATTTACGGCGTTCTGGATTTCGGGCGGTTACAGAAAAACTGCAAGTTTCCAATTTT
CCTTTTTTTGAATTGGATGACAAAGGAACAAGCGTATTGATTAGCCAAGTTTCAGGGGAGGCGATGGGAAGTTGTGTACT
TTTTTTCTATGATTTAGATAGTTCTGGCTGTATTGGCTCAACTTATACCAAAGGGCTTTGCATTCAAGATGGAAAAAATC
AAGTAAGAGAGATTGAACGTGAGTTATTTGGTTATCGCTTAAATAAAAAAATGTTAGAAACCCGTTTAACTTATAAAAAT
ACGGTAAATCAGGAATGTTCTCAAGAACAATGTCGAACTTATACTCAGCAACCTGCATGCGAAAAAGGAGGATGGGTGGA
TTTATTTGATAACAAAGAAATTGCCATTTCTCAGTTTTTCTTACAATGGCTAAAAGAAGGAGAATTAATTGAAGCCCATC
TTATGGGATATTTAGTCAAACAACCGCATATCCAGTATAAAAGCCATATTGTTATTCCATTGCTTAATCAAGGTCGCTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Haemophilus influenzae Rd KW20

47.479

99.582

0.473