Detailed information    

insolico Bioinformatically predicted

Overview

Name   comQ   Type   Machinery gene
Locus tag   ACIO08_RS08380 Genome accession   NZ_CP173233
Coordinates   1725914..1726219 (-) Length   101 a.a.
NCBI ID   WP_017806953.1    Uniprot ID   A0A0F5EWR5
Organism   Avibacterium paragallinarum strain npAP/OH-USA/20230213/S1-2     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1720914..1731219
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIO08_RS08365 (ACIO08_08365) araD 1720919..1721614 (+) 696 WP_410677980.1 L-ribulose-5-phosphate 4-epimerase -
  ACIO08_RS08370 (ACIO08_08370) - 1721642..1722460 (+) 819 WP_264256496.1 pyridoxal phosphatase -
  ACIO08_RS08375 (ACIO08_08375) recC 1722498..1725902 (-) 3405 WP_410677982.1 exodeoxyribonuclease V subunit gamma -
  ACIO08_RS08380 (ACIO08_08380) comQ 1725914..1726219 (-) 306 WP_017806953.1 DUF5374 domain-containing protein Machinery gene
  ACIO08_RS08385 (ACIO08_08385) - 1726200..1726865 (-) 666 WP_264256498.1 DUF2572 family protein -
  ACIO08_RS08390 (ACIO08_08390) comO 1726867..1727586 (-) 720 WP_264256499.1 hypothetical protein Machinery gene
  ACIO08_RS08395 (ACIO08_08395) comN 1727587..1728108 (-) 522 WP_264256500.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  ACIO08_RS08415 (ACIO08_08415) pal 1728748..1729200 (-) 453 WP_264256501.1 peptidoglycan-associated lipoprotein Pal -
  ACIO08_RS08420 (ACIO08_08420) tolB 1729211..1730500 (-) 1290 WP_264256502.1 Tol-Pal system beta propeller repeat protein TolB -

Sequence

Protein


Download         Length: 101 a.a.        Molecular weight: 11774.67 Da        Isoelectric Point: 10.1103

>NTDB_id=957671 ACIO08_RS08380 WP_017806953.1 1725914..1726219(-) (comQ) [Avibacterium paragallinarum strain npAP/OH-USA/20230213/S1-2]
MILKPYRLLKYKGMNLFSLLVTLTLFSGIFLSVNQWLSHQRQSAVRIFQDLQAWSIANNQQQRRLMGLDCQSQIEQNHII
FHISCDGNQVTVHYPTGNVRL

Nucleotide


Download         Length: 306 bp        

>NTDB_id=957671 ACIO08_RS08380 WP_017806953.1 1725914..1726219(-) (comQ) [Avibacterium paragallinarum strain npAP/OH-USA/20230213/S1-2]
ATGATTTTGAAACCTTATAGATTGTTAAAATATAAAGGAATGAATTTGTTTTCTTTGCTGGTGACTTTAACGTTGTTTAG
TGGTATTTTTCTTTCCGTTAATCAGTGGCTTTCACATCAGCGACAAAGTGCGGTGAGAATTTTCCAAGATTTACAAGCTT
GGTCTATTGCAAATAATCAACAGCAGCGTCGGCTTATGGGGCTAGATTGCCAGTCTCAAATTGAACAGAACCACATTATT
TTCCATATTTCTTGCGATGGAAATCAAGTTACAGTGCATTATCCCACTGGGAATGTACGTTTATAA

Domains

Predicted by InterProScan.

Family of unknown function (DUF5374) (DUF5374)

(62-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0F5EWR5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comQ Haemophilus influenzae Rd KW20

45.455

87.129

0.396