Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   ACIO05_RS08715 Genome accession   NZ_CP173232
Coordinates   1807284..1809116 (-) Length   610 a.a.
NCBI ID   WP_410678346.1    Uniprot ID   -
Organism   Avibacterium paragallinarum strain npAP/OH-USA/20230213/S1-3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1802284..1814116
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIO05_RS08695 (ACIO05_08695) - 1804439..1805134 (-) 696 WP_110479462.1 molecular chaperone -
  ACIO05_RS08700 (ACIO05_08700) - 1805211..1805771 (-) 561 WP_110479461.1 fimbrial protein -
  ACIO05_RS08705 (ACIO05_08705) rplY 1806099..1806386 (-) 288 WP_017805712.1 50S ribosomal protein L25 -
  ACIO05_RS08710 (ACIO05_08710) - 1806627..1807235 (+) 609 WP_410678347.1 DedA family protein -
  ACIO05_RS08715 (ACIO05_08715) uvrC 1807284..1809116 (-) 1833 WP_410678346.1 excinuclease ABC subunit UvrC Machinery gene
  ACIO05_RS08720 (ACIO05_08720) - 1809440..1810153 (+) 714 WP_035695912.1 ABC transporter ATP-binding protein -
  ACIO05_RS08725 (ACIO05_08725) - 1810153..1810908 (+) 756 WP_410678345.1 ABC transporter permease -
  ACIO05_RS08730 (ACIO05_08730) - 1810917..1811861 (+) 945 WP_035685733.1 ABC transporter substrate-binding protein -
  ACIO05_RS08735 (ACIO05_08735) kdsB 1812286..1813068 (-) 783 WP_410678344.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  ACIO05_RS08740 (ACIO05_08740) - 1813065..1813247 (-) 183 WP_410678343.1 Trm112 family protein -

Sequence

Protein


Download         Length: 610 a.a.        Molecular weight: 69196.27 Da        Isoelectric Point: 9.6410

>NTDB_id=957619 ACIO05_RS08715 WP_410678346.1 1807284..1809116(-) (uvrC) [Avibacterium paragallinarum strain npAP/OH-USA/20230213/S1-3]
MTFNPKQFLANVPQSPGVYRMYDAKDQVIYVGKAKDLKKRLSSYFRRNVSSKKTEALVAAIHRIETTITSSETEALLLEH
NYIKTYQPRYNVLLRDDKSYPYILLTKERHPRITAYRGSKKIQGEYFGPYPNVGAVRETLSLLQKLFPVRQCENSVYRNR
SRPCLQYQIERCSAPCVAGYISDEDYQQQVNFARLFLQGKDQQVLDHLVAKMEQASQALNFEEAARIRDQIQAVRAVIEK
QFVSNDRLDDIDIIAIAYQLGIACVQVLFIRQGKILGNRSYFPKVPANTDLSELTATFVGQFYLQAHQGRTVPNSIIVDH
KLAEKAQLESLLSEQAGRKVQIQDSAKGEKSKYLQLAQMNAQAALVTQLKQSTLINERYQALQDLLGIEKIQRMECFDIS
HTMGEQTIASCVVFNQDGPLKSDYRRFNITGITGGDDYAAMEQALLKRYDKDLDAEKIPDVIFIDGGKGQLNRALQVFQQ
LKVKWDKKRPHLIGVAKGVDRRADLETLIISKQDREINLPPDSLALHLIQHIRDESHNHAISGHRKKRQKAFTQSGLETI
EGVGAKRRQALLKYLGGMQGVKKASLDEIASVPGISQSLAEKIFETMRGD

Nucleotide


Download         Length: 1833 bp        

>NTDB_id=957619 ACIO05_RS08715 WP_410678346.1 1807284..1809116(-) (uvrC) [Avibacterium paragallinarum strain npAP/OH-USA/20230213/S1-3]
ATGACTTTTAACCCTAAACAATTTCTGGCTAATGTACCGCAATCGCCTGGTGTTTATCGAATGTATGATGCGAAGGATCA
GGTGATCTATGTGGGCAAAGCGAAAGATTTAAAAAAACGCCTGTCGAGCTATTTTCGTCGCAATGTGTCGAGTAAAAAAA
CGGAAGCCTTAGTGGCAGCCATTCATCGCATTGAAACCACCATCACCTCAAGCGAAACGGAAGCCTTGCTGTTAGAGCAT
AATTATATTAAAACCTACCAGCCACGCTATAACGTGCTATTGCGTGATGACAAATCATACCCCTATATTTTGCTTACCAA
AGAACGCCACCCCAGAATTACCGCTTACCGTGGTAGTAAGAAAATTCAGGGGGAATATTTTGGACCTTATCCCAATGTGG
GGGCGGTGCGGGAAACTCTGTCATTATTACAAAAATTATTCCCCGTGCGACAATGTGAAAACTCGGTGTATCGCAACCGC
TCACGCCCTTGTTTGCAATATCAAATTGAGCGTTGCTCCGCCCCTTGTGTAGCGGGCTATATTTCTGATGAGGATTACCA
ACAGCAAGTGAATTTCGCTCGCCTTTTTTTGCAAGGCAAGGATCAACAAGTGCTGGATCACCTTGTCGCCAAAATGGAAC
AAGCGAGCCAAGCGTTAAATTTTGAAGAAGCGGCACGCATTCGTGATCAAATTCAAGCGGTGCGAGCGGTGATCGAAAAA
CAATTCGTCAGCAATGATCGCCTTGATGATATTGATATTATCGCCATTGCCTACCAACTGGGCATCGCTTGCGTGCAAGT
ACTATTTATTCGACAAGGCAAGATTTTGGGCAACCGTAGTTATTTTCCGAAAGTGCCTGCCAATACGGATTTATCCGAAC
TCACCGCCACCTTTGTCGGACAGTTTTATTTACAGGCTCATCAAGGGCGAACCGTGCCGAACAGCATTATTGTGGATCAC
AAACTCGCGGAAAAAGCCCAGCTAGAAAGCCTGTTATCAGAGCAAGCGGGGCGAAAAGTGCAGATTCAAGACAGTGCCAA
AGGGGAAAAAAGTAAGTATTTGCAATTGGCACAAATGAACGCTCAAGCGGCGTTGGTTACTCAACTGAAACAATCCACGC
TGATTAACGAACGTTATCAAGCGTTGCAAGATTTGCTTGGCATTGAAAAAATCCAACGAATGGAATGTTTTGACATCAGC
CACACAATGGGTGAACAAACCATTGCGTCTTGTGTCGTGTTCAATCAAGACGGGCCGCTGAAATCTGATTATCGTCGTTT
TAATATCACTGGCATTACAGGCGGTGATGATTATGCTGCAATGGAACAAGCCTTATTGAAACGCTATGATAAAGATCTGG
ACGCAGAAAAAATTCCTGATGTGATCTTTATTGACGGCGGTAAAGGACAGCTTAACCGAGCCTTACAAGTGTTCCAACAG
CTCAAGGTAAAATGGGACAAAAAAAGACCGCACTTAATTGGTGTGGCGAAAGGTGTGGATCGCCGTGCAGACCTAGAAAC
ACTCATCATCAGCAAGCAAGATCGCGAAATTAATTTACCGCCGGATAGCCTTGCCTTGCATTTAATTCAGCATATCCGTG
ACGAAAGCCATAATCACGCCATTAGCGGACACCGCAAAAAACGGCAAAAAGCCTTCACCCAAAGCGGATTAGAAACCATT
GAAGGGGTGGGGGCTAAACGTCGTCAAGCCCTATTGAAATACCTTGGTGGAATGCAAGGCGTGAAAAAAGCGAGCCTTGA
TGAAATTGCATCTGTTCCTGGCATTTCTCAATCTCTTGCAGAAAAAATTTTTGAAACAATGCGAGGGGATTAA

Domains

Predicted by InterProScan.

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(384-541)

GIY-YIG catalytic domain (GIY-YIG)

(17-91)

UvrB/uvrC motif (UVR)

(203-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Streptococcus pneumoniae TIGR4

37.937

98.525

0.374
  uvrC Streptococcus pneumoniae R6

37.604

98.525

0.37
  uvrC Streptococcus pneumoniae D39

37.604

98.525

0.37