Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   ACIO03_RS11340 Genome accession   NZ_CP173231
Coordinates   2369563..2371395 (+) Length   610 a.a.
NCBI ID   WP_410678346.1    Uniprot ID   -
Organism   Avibacterium paragallinarum strain npAP/OH-USA/20230213/S1-4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2364563..2376395
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIO03_RS11315 (ACIO03_11315) - 2365432..2365614 (+) 183 WP_410678343.1 Trm112 family protein -
  ACIO03_RS11320 (ACIO03_11320) kdsB 2365611..2366393 (+) 783 WP_410678344.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  ACIO03_RS11325 (ACIO03_11325) - 2366818..2367762 (-) 945 WP_035685733.1 ABC transporter substrate-binding protein -
  ACIO03_RS11330 (ACIO03_11330) - 2367771..2368526 (-) 756 WP_410678345.1 ABC transporter permease -
  ACIO03_RS11335 (ACIO03_11335) - 2368526..2369239 (-) 714 WP_035695912.1 ABC transporter ATP-binding protein -
  ACIO03_RS11340 (ACIO03_11340) uvrC 2369563..2371395 (+) 1833 WP_410678346.1 excinuclease ABC subunit UvrC Machinery gene
  ACIO03_RS11345 (ACIO03_11345) - 2371444..2372052 (-) 609 WP_410678347.1 DedA family protein -
  ACIO03_RS11350 (ACIO03_11350) rplY 2372293..2372580 (+) 288 WP_017805712.1 50S ribosomal protein L25 -
  ACIO03_RS11355 (ACIO03_11355) - 2372908..2373468 (+) 561 WP_110479461.1 fimbrial protein -
  ACIO03_RS11360 (ACIO03_11360) - 2373545..2374240 (+) 696 WP_110479462.1 molecular chaperone -

Sequence

Protein


Download         Length: 610 a.a.        Molecular weight: 69196.27 Da        Isoelectric Point: 9.6410

>NTDB_id=957584 ACIO03_RS11340 WP_410678346.1 2369563..2371395(+) (uvrC) [Avibacterium paragallinarum strain npAP/OH-USA/20230213/S1-4]
MTFNPKQFLANVPQSPGVYRMYDAKDQVIYVGKAKDLKKRLSSYFRRNVSSKKTEALVAAIHRIETTITSSETEALLLEH
NYIKTYQPRYNVLLRDDKSYPYILLTKERHPRITAYRGSKKIQGEYFGPYPNVGAVRETLSLLQKLFPVRQCENSVYRNR
SRPCLQYQIERCSAPCVAGYISDEDYQQQVNFARLFLQGKDQQVLDHLVAKMEQASQALNFEEAARIRDQIQAVRAVIEK
QFVSNDRLDDIDIIAIAYQLGIACVQVLFIRQGKILGNRSYFPKVPANTDLSELTATFVGQFYLQAHQGRTVPNSIIVDH
KLAEKAQLESLLSEQAGRKVQIQDSAKGEKSKYLQLAQMNAQAALVTQLKQSTLINERYQALQDLLGIEKIQRMECFDIS
HTMGEQTIASCVVFNQDGPLKSDYRRFNITGITGGDDYAAMEQALLKRYDKDLDAEKIPDVIFIDGGKGQLNRALQVFQQ
LKVKWDKKRPHLIGVAKGVDRRADLETLIISKQDREINLPPDSLALHLIQHIRDESHNHAISGHRKKRQKAFTQSGLETI
EGVGAKRRQALLKYLGGMQGVKKASLDEIASVPGISQSLAEKIFETMRGD

Nucleotide


Download         Length: 1833 bp        

>NTDB_id=957584 ACIO03_RS11340 WP_410678346.1 2369563..2371395(+) (uvrC) [Avibacterium paragallinarum strain npAP/OH-USA/20230213/S1-4]
ATGACTTTTAACCCTAAACAATTTCTGGCTAATGTACCGCAATCGCCTGGTGTTTATCGAATGTATGATGCGAAGGATCA
GGTGATCTATGTGGGCAAAGCGAAAGATTTAAAAAAACGCCTGTCGAGCTATTTTCGTCGCAATGTGTCGAGTAAAAAAA
CGGAAGCCTTAGTGGCAGCCATTCATCGCATTGAAACCACCATCACCTCAAGCGAAACGGAAGCCTTGCTGTTAGAGCAT
AATTATATTAAAACCTACCAGCCACGCTATAACGTGCTATTGCGTGATGACAAATCATACCCCTATATTTTGCTTACCAA
AGAACGCCACCCCAGAATTACCGCTTACCGTGGTAGTAAGAAAATTCAGGGGGAATATTTTGGACCTTATCCCAATGTGG
GGGCGGTGCGGGAAACTCTGTCATTATTACAAAAATTATTCCCCGTGCGACAATGTGAAAACTCGGTGTATCGCAACCGC
TCACGCCCTTGTTTGCAATATCAAATTGAGCGTTGCTCCGCCCCTTGTGTAGCGGGCTATATTTCTGATGAGGATTACCA
ACAGCAAGTGAATTTCGCTCGCCTTTTTTTGCAAGGCAAGGATCAACAAGTGCTGGATCACCTTGTCGCCAAAATGGAAC
AAGCGAGCCAAGCGTTAAATTTTGAAGAAGCGGCACGCATTCGTGATCAAATTCAAGCGGTGCGAGCGGTGATCGAAAAA
CAATTCGTCAGCAATGATCGCCTTGATGATATTGATATTATCGCCATTGCCTACCAACTGGGCATCGCTTGCGTGCAAGT
ACTATTTATTCGACAAGGCAAGATTTTGGGCAACCGTAGTTATTTTCCGAAAGTGCCTGCCAATACGGATTTATCCGAAC
TCACCGCCACCTTTGTCGGACAGTTTTATTTACAGGCTCATCAAGGGCGAACCGTGCCGAACAGCATTATTGTGGATCAC
AAACTCGCGGAAAAAGCCCAGCTAGAAAGCCTGTTATCAGAGCAAGCGGGGCGAAAAGTGCAGATTCAAGACAGTGCCAA
AGGGGAAAAAAGTAAGTATTTGCAATTGGCACAAATGAACGCTCAAGCGGCGTTGGTTACTCAACTGAAACAATCCACGC
TGATTAACGAACGTTATCAAGCGTTGCAAGATTTGCTTGGCATTGAAAAAATCCAACGAATGGAATGTTTTGACATCAGC
CACACAATGGGTGAACAAACCATTGCGTCTTGTGTCGTGTTCAATCAAGACGGGCCGCTGAAATCTGATTATCGTCGTTT
TAATATCACTGGCATTACAGGCGGTGATGATTATGCTGCAATGGAACAAGCCTTATTGAAACGCTATGATAAAGATCTGG
ACGCAGAAAAAATTCCTGATGTGATCTTTATTGACGGCGGTAAAGGACAGCTTAACCGAGCCTTACAAGTGTTCCAACAG
CTCAAGGTAAAATGGGACAAAAAAAGACCGCACTTAATTGGTGTGGCGAAAGGTGTGGATCGCCGTGCAGACCTAGAAAC
ACTCATCATCAGCAAGCAAGATCGCGAAATTAATTTACCGCCGGATAGCCTTGCCTTGCATTTAATTCAGCATATCCGTG
ACGAAAGCCATAATCACGCCATTAGCGGACACCGCAAAAAACGGCAAAAAGCCTTCACCCAAAGCGGATTAGAAACCATT
GAAGGGGTGGGGGCTAAACGTCGTCAAGCCCTATTGAAATACCTTGGTGGAATGCAAGGCGTGAAAAAAGCGAGCCTTGA
TGAAATTGCATCTGTTCCTGGCATTTCTCAATCTCTTGCAGAAAAAATTTTTGAAACAATGCGAGGGGATTAA

Domains

Predicted by InterProScan.

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(384-541)

GIY-YIG catalytic domain (GIY-YIG)

(17-91)

UvrB/uvrC motif (UVR)

(203-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Streptococcus pneumoniae TIGR4

37.937

98.525

0.374
  uvrC Streptococcus pneumoniae R6

37.604

98.525

0.37
  uvrC Streptococcus pneumoniae D39

37.604

98.525

0.37