Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   ACIO03_RS08635 Genome accession   NZ_CP173231
Coordinates   1788956..1789675 (-) Length   239 a.a.
NCBI ID   WP_264256499.1    Uniprot ID   -
Organism   Avibacterium paragallinarum strain npAP/OH-USA/20230213/S1-4     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1783956..1794675
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIO03_RS08620 (ACIO03_08620) recC 1784587..1787991 (-) 3405 WP_410677982.1 exodeoxyribonuclease V subunit gamma -
  ACIO03_RS08625 (ACIO03_08625) comQ 1788003..1788308 (-) 306 WP_017806953.1 DUF5374 domain-containing protein Machinery gene
  ACIO03_RS08630 (ACIO03_08630) - 1788289..1788954 (-) 666 WP_264256498.1 DUF2572 family protein -
  ACIO03_RS08635 (ACIO03_08635) comO 1788956..1789675 (-) 720 WP_264256499.1 hypothetical protein Machinery gene
  ACIO03_RS08640 (ACIO03_08640) comN 1789676..1790197 (-) 522 WP_264256500.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  ACIO03_RS08660 (ACIO03_08660) pal 1790837..1791289 (-) 453 WP_264256501.1 peptidoglycan-associated lipoprotein Pal -
  ACIO03_RS08665 (ACIO03_08665) tolB 1791300..1792589 (-) 1290 WP_264256502.1 Tol-Pal system beta propeller repeat protein TolB -
  ACIO03_RS08670 (ACIO03_08670) tolA 1792641..1793843 (-) 1203 WP_264256503.1 cell envelope integrity protein TolA -
  ACIO03_RS08675 (ACIO03_08675) tolR 1793860..1794282 (-) 423 WP_046098639.1 colicin uptake protein TolR -

Sequence

Protein


Download         Length: 239 a.a.        Molecular weight: 27833.14 Da        Isoelectric Point: 8.2091

>NTDB_id=957567 ACIO03_RS08635 WP_264256499.1 1788956..1789675(-) (comO) [Avibacterium paragallinarum strain npAP/OH-USA/20230213/S1-4]
MYRRYVKGQSLLSLMLSISLSSFLLIIIFSFYTYSQKQNQEMRMQLYLQNEIERVLQLMAKDLRRSGFRAVTEKLQVSNF
PFFELDDKGTSVLISQVSGEAMGSCVLFFYDLDSSGCIGSTYTKGLCIQDGKNQVREIERELFGYRLNKKMLETRLTYKN
TVNQECSQEQCRTYTQQPACEKGGWVDLFDNKEIAISQFFLQWLKEGELIEAHLMGYLVKQPHIQYKSHIVIPLLNQGR

Nucleotide


Download         Length: 720 bp        

>NTDB_id=957567 ACIO03_RS08635 WP_264256499.1 1788956..1789675(-) (comO) [Avibacterium paragallinarum strain npAP/OH-USA/20230213/S1-4]
ATGTATCGTCGTTATGTTAAAGGGCAGAGTTTATTGTCTTTAATGCTTTCTATTTCTTTATCTTCTTTCTTATTAATCAT
TATTTTTTCTTTTTATACCTATAGCCAAAAGCAAAACCAAGAAATGCGAATGCAATTATATTTACAAAATGAAATTGAAC
GCGTACTTCAATTAATGGCGAAAGATTTACGGCGTTCTGGATTTCGGGCGGTTACAGAAAAACTGCAAGTTTCCAATTTT
CCTTTTTTTGAATTGGATGACAAAGGAACAAGCGTATTGATTAGCCAAGTTTCAGGGGAGGCGATGGGAAGTTGTGTACT
TTTTTTCTATGATTTAGATAGTTCTGGCTGTATTGGCTCAACTTATACCAAAGGGCTTTGCATTCAAGATGGAAAAAATC
AAGTAAGAGAGATTGAACGTGAGTTATTTGGTTATCGCTTAAATAAAAAAATGTTAGAAACCCGTTTAACTTATAAAAAT
ACGGTAAATCAGGAATGTTCTCAAGAACAATGTCGAACTTATACTCAGCAACCTGCATGCGAAAAAGGAGGATGGGTGGA
TTTATTTGATAACAAAGAAATTGCCATTTCTCAGTTTTTCTTACAATGGCTAAAAGAAGGAGAATTAATTGAAGCCCATC
TTATGGGATATTTAGTCAAACAACCGCATATCCAGTATAAAAGCCATATTGTTATTCCATTGCTTAATCAAGGTCGCTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Haemophilus influenzae Rd KW20

47.479

99.582

0.473