Detailed information    

insolico Bioinformatically predicted

Overview

Name   comQ   Type   Machinery gene
Locus tag   ACIO03_RS08625 Genome accession   NZ_CP173231
Coordinates   1788003..1788308 (-) Length   101 a.a.
NCBI ID   WP_017806953.1    Uniprot ID   A0A0F5EWR5
Organism   Avibacterium paragallinarum strain npAP/OH-USA/20230213/S1-4     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1783003..1793308
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIO03_RS08610 (ACIO03_08610) araD 1783008..1783703 (+) 696 WP_410677980.1 L-ribulose-5-phosphate 4-epimerase -
  ACIO03_RS08615 (ACIO03_08615) - 1783731..1784549 (+) 819 WP_264256496.1 pyridoxal phosphatase -
  ACIO03_RS08620 (ACIO03_08620) recC 1784587..1787991 (-) 3405 WP_410677982.1 exodeoxyribonuclease V subunit gamma -
  ACIO03_RS08625 (ACIO03_08625) comQ 1788003..1788308 (-) 306 WP_017806953.1 DUF5374 domain-containing protein Machinery gene
  ACIO03_RS08630 (ACIO03_08630) - 1788289..1788954 (-) 666 WP_264256498.1 DUF2572 family protein -
  ACIO03_RS08635 (ACIO03_08635) comO 1788956..1789675 (-) 720 WP_264256499.1 hypothetical protein Machinery gene
  ACIO03_RS08640 (ACIO03_08640) comN 1789676..1790197 (-) 522 WP_264256500.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  ACIO03_RS08660 (ACIO03_08660) pal 1790837..1791289 (-) 453 WP_264256501.1 peptidoglycan-associated lipoprotein Pal -
  ACIO03_RS08665 (ACIO03_08665) tolB 1791300..1792589 (-) 1290 WP_264256502.1 Tol-Pal system beta propeller repeat protein TolB -

Sequence

Protein


Download         Length: 101 a.a.        Molecular weight: 11774.67 Da        Isoelectric Point: 10.1103

>NTDB_id=957566 ACIO03_RS08625 WP_017806953.1 1788003..1788308(-) (comQ) [Avibacterium paragallinarum strain npAP/OH-USA/20230213/S1-4]
MILKPYRLLKYKGMNLFSLLVTLTLFSGIFLSVNQWLSHQRQSAVRIFQDLQAWSIANNQQQRRLMGLDCQSQIEQNHII
FHISCDGNQVTVHYPTGNVRL

Nucleotide


Download         Length: 306 bp        

>NTDB_id=957566 ACIO03_RS08625 WP_017806953.1 1788003..1788308(-) (comQ) [Avibacterium paragallinarum strain npAP/OH-USA/20230213/S1-4]
ATGATTTTGAAACCTTATAGATTGTTAAAATATAAAGGAATGAATTTGTTTTCTTTGCTGGTGACTTTAACGTTGTTTAG
TGGTATTTTTCTTTCCGTTAATCAGTGGCTTTCACATCAGCGACAAAGTGCGGTGAGAATTTTCCAAGATTTACAAGCTT
GGTCTATTGCAAATAATCAACAGCAGCGTCGGCTTATGGGGCTAGATTGCCAGTCTCAAATTGAACAGAACCACATTATT
TTCCATATTTCTTGCGATGGAAATCAAGTTACAGTGCATTATCCCACTGGGAATGTACGTTTATAA

Domains

Predicted by InterProScan.

Family of unknown function (DUF5374) (DUF5374)

(62-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0F5EWR5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comQ Haemophilus influenzae Rd KW20

45.455

87.129

0.396