Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   ACIO06_RS05110 Genome accession   NZ_CP173230
Coordinates   1051286..1052005 (+) Length   239 a.a.
NCBI ID   WP_264245430.1    Uniprot ID   -
Organism   Avibacterium paragallinarum strain npAP/GA-USA/20231216/S1-2     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1046286..1057005
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIO06_RS05070 (ACIO06_05070) tolR 1046762..1047184 (+) 423 WP_410680845.1 colicin uptake protein TolR -
  ACIO06_RS05075 (ACIO06_05075) tolA 1047201..1048319 (+) 1119 WP_410680847.1 cell envelope integrity protein TolA -
  ACIO06_RS05080 (ACIO06_05080) tolB 1048371..1049660 (+) 1290 WP_410681049.1 Tol-Pal system beta propeller repeat protein TolB -
  ACIO06_RS05085 (ACIO06_05085) pal 1049671..1050123 (+) 453 WP_264256501.1 peptidoglycan-associated lipoprotein Pal -
  ACIO06_RS05105 (ACIO06_05105) comN 1050763..1051284 (+) 522 WP_410680849.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  ACIO06_RS05110 (ACIO06_05110) comO 1051286..1052005 (+) 720 WP_264245430.1 hypothetical protein Machinery gene
  ACIO06_RS05115 (ACIO06_05115) - 1052007..1052672 (+) 666 WP_410680851.1 DUF2572 family protein -
  ACIO06_RS05120 (ACIO06_05120) comQ 1052653..1052958 (+) 306 WP_017806953.1 DUF5374 domain-containing protein Machinery gene
  ACIO06_RS05125 (ACIO06_05125) recC 1052970..1056374 (+) 3405 WP_410680853.1 exodeoxyribonuclease V subunit gamma -

Sequence

Protein


Download         Length: 239 a.a.        Molecular weight: 27804.11 Da        Isoelectric Point: 8.4448

>NTDB_id=957499 ACIO06_RS05110 WP_264245430.1 1051286..1052005(+) (comO) [Avibacterium paragallinarum strain npAP/GA-USA/20231216/S1-2]
MYRRYVKGQSLLSLMLSISLSSFLLIIIFSFYTYSQKQNQEMRMQLYLQNEIERVLQLMAKDLRRSGFRAVTEKLQVSNF
PFFELDDKGTSVLISQASGEAMGSCVLFFYDLDSSGCIGSTYTKGLCIQNGKNQVREIERELFGYRLNKKMLETRLTYKN
TVNQECSQEQCRTYTQQPACEKGGWVDLFDNKEIAISQFFLQWIKEGELIEAHLMGYLVKQPHIQYKSHIVIPLLNQGR

Nucleotide


Download         Length: 720 bp        

>NTDB_id=957499 ACIO06_RS05110 WP_264245430.1 1051286..1052005(+) (comO) [Avibacterium paragallinarum strain npAP/GA-USA/20231216/S1-2]
ATGTATCGTCGTTATGTTAAAGGGCAGAGTTTATTGTCTTTAATGCTTTCTATTTCTTTATCTTCTTTCTTATTAATCAT
TATTTTTTCTTTTTATACCTATAGCCAAAAGCAAAACCAAGAAATGCGAATGCAATTATATTTACAAAATGAAATTGAAC
GCGTGCTTCAATTAATGGCGAAAGATTTACGGCGTTCTGGATTTCGGGCGGTTACAGAAAAACTGCAAGTTTCCAATTTT
CCTTTTTTTGAATTGGATGACAAAGGAACAAGCGTATTGATTAGCCAAGCTTCAGGGGAGGCGATGGGAAGTTGTGTACT
TTTTTTCTATGATTTAGATAGTTCTGGCTGTATTGGCTCAACTTATACCAAAGGGCTTTGCATTCAAAATGGAAAAAATC
AAGTAAGAGAGATTGAACGTGAGTTATTTGGTTATCGCTTAAATAAAAAAATGTTAGAAACCCGTTTAACTTATAAAAAT
ACGGTAAATCAGGAATGTTCTCAAGAACAATGTCGAACTTATACTCAGCAACCTGCATGCGAAAAAGGAGGATGGGTGGA
TTTATTTGATAACAAAGAAATTGCCATTTCTCAGTTTTTCTTACAATGGATAAAAGAAGGAGAATTAATTGAAGCCCATC
TTATGGGATATTTAGTCAAACAACCGCATATCCAGTATAAAAGCCATATTGTTATTCCATTGCTTAATCAAGGTCGCTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Haemophilus influenzae Rd KW20

47.059

99.582

0.469