Detailed information    

insolico Bioinformatically predicted

Overview

Name   comQ   Type   Machinery gene
Locus tag   ACIO06_RS05120 Genome accession   NZ_CP173230
Coordinates   1052653..1052958 (+) Length   101 a.a.
NCBI ID   WP_017806953.1    Uniprot ID   A0A0F5EWR5
Organism   Avibacterium paragallinarum strain npAP/GA-USA/20231216/S1-2     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1047653..1057958
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIO06_RS05080 (ACIO06_05080) tolB 1048371..1049660 (+) 1290 WP_410681049.1 Tol-Pal system beta propeller repeat protein TolB -
  ACIO06_RS05085 (ACIO06_05085) pal 1049671..1050123 (+) 453 WP_264256501.1 peptidoglycan-associated lipoprotein Pal -
  ACIO06_RS05105 (ACIO06_05105) comN 1050763..1051284 (+) 522 WP_410680849.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  ACIO06_RS05110 (ACIO06_05110) comO 1051286..1052005 (+) 720 WP_264245430.1 hypothetical protein Machinery gene
  ACIO06_RS05115 (ACIO06_05115) - 1052007..1052672 (+) 666 WP_410680851.1 DUF2572 family protein -
  ACIO06_RS05120 (ACIO06_05120) comQ 1052653..1052958 (+) 306 WP_017806953.1 DUF5374 domain-containing protein Machinery gene
  ACIO06_RS05125 (ACIO06_05125) recC 1052970..1056374 (+) 3405 WP_410680853.1 exodeoxyribonuclease V subunit gamma -
  ACIO06_RS05130 (ACIO06_05130) - 1056412..1057230 (-) 819 WP_410680855.1 pyridoxal phosphatase -
  ACIO06_RS05135 (ACIO06_05135) araD 1057258..1057953 (-) 696 WP_410680857.1 L-ribulose-5-phosphate 4-epimerase -

Sequence

Protein


Download         Length: 101 a.a.        Molecular weight: 11774.67 Da        Isoelectric Point: 10.1103

>NTDB_id=957500 ACIO06_RS05120 WP_017806953.1 1052653..1052958(+) (comQ) [Avibacterium paragallinarum strain npAP/GA-USA/20231216/S1-2]
MILKPYRLLKYKGMNLFSLLVTLTLFSGIFLSVNQWLSHQRQSAVRIFQDLQAWSIANNQQQRRLMGLDCQSQIEQNHII
FHISCDGNQVTVHYPTGNVRL

Nucleotide


Download         Length: 306 bp        

>NTDB_id=957500 ACIO06_RS05120 WP_017806953.1 1052653..1052958(+) (comQ) [Avibacterium paragallinarum strain npAP/GA-USA/20231216/S1-2]
ATGATTTTGAAACCTTATAGATTGTTAAAATATAAAGGAATGAATTTGTTTTCTTTGCTGGTGACTTTAACGTTGTTTAG
TGGTATTTTTCTTTCCGTTAATCAGTGGCTTTCACATCAGCGACAAAGTGCGGTGAGAATTTTCCAAGATTTACAAGCTT
GGTCTATTGCAAATAATCAACAGCAGCGTCGGCTTATGGGGCTAGATTGCCAGTCTCAAATTGAACAGAACCACATTATT
TTCCATATTTCTTGCGATGGAAATCAAGTTACAGTGCATTATCCCACTGGGAATGTACGTTTATAA

Domains

Predicted by InterProScan.

Family of unknown function (DUF5374) (DUF5374)

(62-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0F5EWR5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comQ Haemophilus influenzae Rd KW20

45.455

87.129

0.396