Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   ACIO04_RS04525 Genome accession   NZ_CP173229
Coordinates   938286..939542 (-) Length   418 a.a.
NCBI ID   WP_410680823.1    Uniprot ID   -
Organism   Avibacterium paragallinarum strain npAP/GA-USA/20231220/S2-1     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 933286..944542
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIO04_RS04505 (ACIO04_04505) - 933733..934143 (+) 411 WP_026138449.1 DNA polymerase III subunit psi -
  ACIO04_RS04510 (ACIO04_04510) rimI 934145..934588 (+) 444 WP_264245499.1 ribosomal protein S18-alanine N-acetyltransferase -
  ACIO04_RS04515 (ACIO04_04515) - 934749..936545 (+) 1797 WP_410680822.1 AMP-dependent synthetase/ligase -
  ACIO04_RS04520 (ACIO04_04520) aspA 936636..938063 (-) 1428 WP_110479872.1 aspartate ammonia-lyase -
  ACIO04_RS04525 (ACIO04_04525) clpX 938286..939542 (-) 1257 WP_410680823.1 ATP-dependent protease ATP-binding subunit ClpX Regulator
  ACIO04_RS04530 (ACIO04_04530) clpP 939546..940136 (-) 591 WP_017806897.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  ACIO04_RS04535 (ACIO04_04535) tig 940254..941552 (-) 1299 WP_410681264.1 trigger factor -
  ACIO04_RS04540 (ACIO04_04540) - 942058..942608 (+) 551 Protein_890 BCCT family transporter -
  ACIO04_RS04545 (ACIO04_04545) - 942612..942968 (-) 357 Protein_891 DNA-processing protein DprA -
  ACIO04_RS04550 (ACIO04_04550) - 943128..943478 (-) 351 WP_035685595.1 DUF305 domain-containing protein -

Sequence

Protein


Download         Length: 418 a.a.        Molecular weight: 46097.76 Da        Isoelectric Point: 4.8115

>NTDB_id=957442 ACIO04_RS04525 WP_410680823.1 938286..939542(-) (clpX) [Avibacterium paragallinarum strain npAP/GA-USA/20231220/S2-1]
MTTEQQLHCSICGKERSEVKKLLQNEEGHGAICNECIELCHNLLVAAEQQENENPQENASQPEKAELPTPHQIRAHLDDY
VIGQDYAKKVLAVAVYNHYKRQQAGYKADDVELGKSNILLIGPTGSGKTLLAETLARMLNVPFAMADATTLTEAGYVGED
VENVLQKLLQNCDYDVEKAEKGIIYIDEIDKITRKSENPSITRDVSGEGVQQALLKLVEGTIASIPPQGGRKHPQQEMLR
LDTSKILFICGGAFAGLDKIIEKRVHVGSGIGFGAEVKGESDKATLTELFAQVEPDDLMKFGLIPEFIGRLPVIAPLAEL
DEEALIQILTEPKNALTKQYQVLFNLENVKLEFTHDALVAMAKQALERKTGARGLRSIVEGLLLDTMYDLPSLKNVEKVI
IEESTVTKNQAPQIIYKS

Nucleotide


Download         Length: 1257 bp        

>NTDB_id=957442 ACIO04_RS04525 WP_410680823.1 938286..939542(-) (clpX) [Avibacterium paragallinarum strain npAP/GA-USA/20231220/S2-1]
ATGACAACAGAACAACAATTACATTGTTCCATCTGCGGCAAAGAACGCAGCGAAGTGAAAAAGCTCCTTCAAAACGAGGA
GGGACATGGAGCGATTTGTAATGAATGTATCGAACTTTGCCACAATTTATTGGTTGCGGCAGAACAACAAGAAAACGAAA
ACCCGCAAGAAAACGCCTCACAACCTGAAAAGGCAGAATTACCTACGCCTCATCAAATTCGTGCGCATTTAGATGATTAT
GTTATTGGGCAAGACTACGCTAAAAAAGTGCTTGCCGTTGCGGTGTATAATCATTACAAACGCCAACAGGCGGGCTATAA
GGCTGACGATGTGGAACTAGGTAAAAGTAATATTTTGCTCATTGGTCCAACGGGAAGCGGAAAAACCCTATTGGCAGAAA
CCCTAGCTAGAATGCTGAATGTGCCTTTTGCAATGGCTGATGCAACCACACTCACCGAAGCGGGTTATGTTGGTGAAGAT
GTAGAAAATGTGCTACAAAAACTTTTGCAAAATTGCGATTATGACGTGGAAAAAGCAGAAAAAGGCATTATTTACATTGA
TGAAATTGACAAAATTACGCGGAAATCAGAGAACCCATCTATTACTCGCGATGTATCAGGCGAGGGTGTTCAGCAAGCCT
TACTTAAATTGGTAGAGGGAACCATTGCGTCAATCCCACCACAAGGTGGACGCAAACACCCACAACAAGAGATGTTACGC
CTTGATACATCAAAAATTCTCTTTATCTGCGGCGGGGCTTTCGCGGGGTTAGATAAAATCATTGAAAAACGCGTACATGT
AGGTAGTGGTATCGGCTTTGGGGCAGAAGTGAAAGGAGAATCAGATAAAGCTACCTTGACGGAACTATTTGCCCAAGTTG
AACCTGATGATTTAATGAAATTTGGTTTAATCCCTGAATTTATTGGGCGTTTACCCGTGATAGCACCATTAGCCGAGCTT
GATGAAGAAGCCTTAATCCAAATTCTGACCGAACCGAAAAATGCACTTACTAAGCAATATCAAGTGCTATTCAACCTTGA
AAATGTGAAGTTAGAATTTACCCACGATGCCCTCGTGGCAATGGCAAAACAGGCGTTGGAAAGAAAAACAGGGGCGAGGG
GATTGCGTTCTATCGTAGAGGGATTGTTGCTTGATACGATGTACGATCTTCCTTCATTGAAAAATGTCGAGAAGGTAATC
ATTGAAGAGAGTACGGTAACAAAAAACCAAGCTCCACAGATAATATATAAATCGTAA

Domains

Predicted by InterProScan.

ClpX C4-type zinc finger (zf-C4_ClpX)

(7-44)

AAA domain (Cdc48 subfamily) (AAA_2)

(115-314)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(320-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

56.763

99.043

0.562
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

55.122

98.086

0.541