Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   AABA14_RS07920 Genome accession   NZ_AP028607
Coordinates   1540854..1541531 (-) Length   225 a.a.
NCBI ID   WP_050096421.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain Sep2     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1535854..1546531
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABA14_RS07895 (TKY123642_15760) - 1536017..1536646 (-) 630 WP_041171117.1 NAD(P)-dependent oxidoreductase -
  AABA14_RS07900 (TKY123642_15770) - 1536883..1537257 (+) 375 WP_001252471.1 hypothetical protein -
  AABA14_RS07905 (TKY123642_15780) - 1537514..1537837 (+) 324 WP_000422771.1 hypothetical protein -
  AABA14_RS07910 (TKY123642_15790) thrS 1537895..1539838 (+) 1944 WP_050200662.1 threonine--tRNA ligase -
  AABA14_RS07915 (TKY123642_15800) - 1539887..1540861 (-) 975 WP_000887953.1 HAMP domain-containing histidine kinase -
  AABA14_RS07920 (TKY123642_15810) braR 1540854..1541531 (-) 678 WP_050096421.1 response regulator transcription factor Regulator
  AABA14_RS07925 (TKY123642_15820) - 1541687..1542760 (+) 1074 WP_001273823.1 DUF2974 domain-containing protein -
  AABA14_RS07930 (TKY123642_15830) - 1542851..1543153 (-) 303 WP_000281608.1 hypothetical protein -
  AABA14_RS07935 (TKY123642_15840) - 1543221..1543658 (-) 438 WP_001166786.1 Rrf2 family transcriptional regulator -
  AABA14_RS07940 (TKY123642_15850) - 1543734..1544576 (-) 843 WP_000160958.1 metallophosphoesterase family protein -
  AABA14_RS07945 (TKY123642_15860) - 1544688..1545338 (+) 651 WP_016398311.1 metal-dependent transcriptional regulator -
  AABA14_RS07950 (TKY123642_15870) - 1545741..1546055 (+) 315 WP_000420682.1 YdcP family protein -
  AABA14_RS07955 (TKY123642_15880) - 1546071..1546457 (+) 387 WP_000985015.1 YdcP family protein -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 25936.10 Da        Isoelectric Point: 5.1362

>NTDB_id=95742 AABA14_RS07920 WP_050096421.1 1540854..1541531(-) (braR) [Streptococcus pneumoniae strain Sep2]
MHKILLIEDDQVIRQQIGKMLSEWGFEVVLVEDFMEVLSLFVQSEPHLVLMDIGLPLFNGYHWCQEIRKISKAPIMFLSS
RDQAMDIVMAINMGADDFVTKPFDQQVLLAKVQGLLRRSYEFGRDESLLEYAGVILNTKSMDLHYQGQVLNLTKNEFQIL
RVLFEHAGNIVARDDLMRELWNSDFFIDDNTLSVNVARLRKKLEEQGLVGFIETKKGIGYGLKHA

Nucleotide


Download         Length: 678 bp        

>NTDB_id=95742 AABA14_RS07920 WP_050096421.1 1540854..1541531(-) (braR) [Streptococcus pneumoniae strain Sep2]
ATGCACAAGATTTTATTAATAGAAGATGATCAGGTCATTCGTCAACAGATTGGGAAAATGCTCTCTGAATGGGGATTTGA
AGTGGTCCTGGTAGAAGACTTTATGGAAGTTTTGAGTCTATTTGTTCAGTCAGAACCTCATCTGGTCCTCATGGATATTG
GTTTGCCCTTGTTTAATGGTTATCACTGGTGTCAGGAAATCCGCAAGATTTCCAAGGCACCTATCATGTTTCTTTCTTCG
AGAGACCAGGCTATGGATATTGTCATGGCAATCAATATGGGGGCGGATGACTTTGTGACCAAGCCTTTTGACCAGCAGGT
TCTTTTAGCCAAGGTTCAGGGCTTGTTGCGTCGTTCCTATGAGTTTGGGCGTGATGAGAGTTTGCTGGAATATGCTGGTG
TTATCCTCAATACCAAATCCATGGATTTACATTATCAAGGGCAAGTCTTGAATTTGACCAAGAATGAATTCCAGATTTTA
CGCGTGTTATTTGAGCATGCAGGCAACATCGTAGCACGTGACGACCTGATGCGGGAACTTTGGAACAGTGACTTTTTCAT
TGATGATAATACCCTCTCTGTCAATGTGGCTCGTTTGCGTAAAAAGTTGGAGGAGCAGGGATTGGTAGGATTTATCGAGA
CCAAGAAAGGAATAGGGTACGGATTGAAGCATGCTTGA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(147-221)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

48.165

96.889

0.467
  vicR Streptococcus mutans UA159

34.894

100

0.364

Multiple sequence alignment