Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   ACIO07_RS07990 Genome accession   NZ_CP173228
Coordinates   1592067..1593899 (+) Length   610 a.a.
NCBI ID   WP_410681745.1    Uniprot ID   -
Organism   Avibacterium paragallinarum strain npAP/GA-USA/20231220/S2-3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1587067..1598899
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIO07_RS07965 (ACIO07_07970) - 1587921..1588103 (+) 183 WP_035685738.1 Trm112 family protein -
  ACIO07_RS07970 (ACIO07_07975) kdsB 1588100..1588882 (+) 783 WP_410681742.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  ACIO07_RS07975 (ACIO07_07980) - 1589336..1590280 (-) 945 WP_410681743.1 ABC transporter substrate-binding protein -
  ACIO07_RS07980 (ACIO07_07985) - 1590289..1591044 (-) 756 WP_410681744.1 ABC transporter permease -
  ACIO07_RS07985 (ACIO07_07990) - 1591044..1591757 (-) 714 WP_035695912.1 ABC transporter ATP-binding protein -
  ACIO07_RS07990 (ACIO07_07995) uvrC 1592067..1593899 (+) 1833 WP_410681745.1 excinuclease ABC subunit UvrC Machinery gene
  ACIO07_RS07995 (ACIO07_08000) - 1593948..1594556 (-) 609 WP_410681746.1 DedA family protein -
  ACIO07_RS08000 (ACIO07_08005) rplY 1594797..1595084 (+) 288 WP_017805712.1 50S ribosomal protein L25 -
  ACIO07_RS08005 (ACIO07_08010) - 1595535..1596578 (-) 1044 WP_410681747.1 Gfo/Idh/MocA family oxidoreductase -
  ACIO07_RS08010 (ACIO07_08015) - 1596588..1597982 (-) 1395 WP_410681748.1 MATE family efflux transporter -
  ACIO07_RS08015 (ACIO07_08020) - 1598065..1598682 (+) 618 WP_410681749.1 riboflavin synthase subunit alpha -

Sequence

Protein


Download         Length: 610 a.a.        Molecular weight: 69097.14 Da        Isoelectric Point: 9.6410

>NTDB_id=957414 ACIO07_RS07990 WP_410681745.1 1592067..1593899(+) (uvrC) [Avibacterium paragallinarum strain npAP/GA-USA/20231220/S2-3]
MTFNPKQFLANVPQSPGVYRMYDAKDQVIYVGKAKDLKKRLSSYFRRNVSSKKTEALVAAIHRIETTITSSETEALLLEH
NYIKTYQPRYNVLLRDDKSYPYILLTKERHPRITAYRGSKKIQGEYFGPYPNVGAVRETLSLLQKLFPVRQCENSVYRNR
SRPCLQYQIERCSAPCVAGYISDEDYQQQVNFARLFLQGKDQQVLDHLVAKMEQASQGLNFEEAARIRDQIQAVRAVIEK
QFVSNDRLDDIDIIAIAYQLGIACVQVLFIRQGKILGNRSYFPKVPANTDLSELTATFVGQFYLQAHQGRSVPNSIIVDH
KLAEKAQLESLLSEQAGRKVQIQDSAKGEKSKYLQLAQMNAQAALVTQLKQSTLINERYQALQDLLGIEKIQRMECFDIS
HTMGEQTIASCVVFNQDGPLKSDYRRFNITGITGGDDYAAMEQALLKRYDKDLDAEKIPDVIFIDGGKGQLNRALQVFDQ
LKVKWDKKRPHLIGVAKGVDRRAGLETLIISKQDREINLPPDSLALHLIQHIRDESHNHAISGHRKKRQKAFTQSGLETI
EGVGAKRRQALLKYLGGMQGVKKASLDEIASVPGISQSLAEKIFETMRGD

Nucleotide


Download         Length: 1833 bp        

>NTDB_id=957414 ACIO07_RS07990 WP_410681745.1 1592067..1593899(+) (uvrC) [Avibacterium paragallinarum strain npAP/GA-USA/20231220/S2-3]
ATGACTTTTAACCCTAAACAATTTCTGGCTAATGTACCGCAATCGCCTGGTGTTTATCGAATGTATGATGCGAAGGATCA
GGTGATCTATGTGGGCAAAGCGAAAGATTTAAAAAAACGCCTGTCGAGCTATTTTCGTCGCAATGTGTCGAGTAAAAAAA
CGGAAGCTTTAGTGGCAGCCATTCATCGCATTGAAACCACCATCACTTCAAGCGAAACAGAAGCCTTGCTACTCGAGCAT
AACTACATCAAAACCTACCAGCCGCGTTATAACGTATTGTTGCGTGATGATAAATCTTACCCCTACATTCTTCTCACCAA
AGAACGCCACCCCAGAATTACCGCTTACCGTGGTAGTAAGAAAATTCAGGGGGAATATTTTGGACCTTATCCCAATGTGG
GGGCGGTGCGGGAAACTCTATCATTATTACAAAAATTATTCCCCGTGCGACAATGTGAAAACTCGGTGTATCGCAACCGC
TCACGCCCTTGTTTGCAATATCAAATTGAGCGTTGCTCCGCCCCTTGTGTAGCGGGCTATATTTCTGATGAGGATTACCA
ACAGCAAGTGAATTTCGCCCGTCTTTTTTTGCAAGGCAAGGATCAACAAGTGCTGGATCACCTTGTCGCCAAAATGGAAC
AAGCGAGCCAAGGGTTAAATTTTGAAGAGGCGGCACGCATTCGTGATCAAATTCAAGCGGTGCGAGCGGTGATCGAAAAA
CAATTCGTCAGCAATGATCGCCTTGATGACATTGATATTATCGCCATTGCCTACCAACTGGGCATCGCTTGCGTACAAGT
GCTGTTTATTCGACAAGGCAAGATTTTGGGCAACCGTAGTTATTTTCCAAAAGTGCCAGCCAATACGGATTTATCTGAAC
TCACCGCCACCTTTGTCGGACAGTTTTATTTACAGGCTCATCAAGGGCGAAGCGTGCCGAACAGCATTATTGTGGATCAC
AAACTCGCGGAAAAAGCCCAGCTAGAAAGCCTGTTATCAGAGCAAGCGGGGCGAAAAGTGCAGATTCAAGACAGTGCCAA
AGGGGAAAAAAGCAAATATTTGCAACTGGCACAAATGAATGCCCAAGCGGCGTTGGTTACCCAACTGAAACAATCCACGC
TGATTAACGAACGTTATCAAGCGTTGCAAGATTTGCTTGGCATTGAAAAAATCCAACGAATGGAATGTTTTGACATCAGC
CACACAATGGGCGAACAAACCATCGCTTCTTGCGTGGTGTTTAATCAAGATGGGCCGCTGAAATCTGATTATCGCCGTTT
TAATATCACCGGCATTACAGGCGGTGATGATTATGCCGCAATGGAGCAAGCCTTATTGAAACGCTATGATAAAGATCTGG
ACGCAGAAAAAATTCCTGATGTGATCTTTATTGACGGCGGCAAAGGGCAGCTTAACCGAGCCTTACAAGTGTTCGATCAA
CTTAAGGTAAAATGGGACAAAAAACGACCGCACTTAATTGGTGTGGCGAAAGGTGTGGATCGCCGTGCTGGCCTAGAAAC
ACTCATCATCAGCAAGCAAGATCGCGAAATTAATTTACCGCCGGATAGCCTTGCCTTGCATTTAATTCAGCATATCCGTG
ACGAAAGCCATAATCACGCCATTAGCGGACACCGCAAAAAACGGCAAAAAGCCTTCACCCAAAGTGGATTAGAAACCATT
GAAGGGGTGGGGGCTAAACGTCGTCAAGCCTTATTGAAATATCTTGGTGGAATGCAAGGCGTGAAAAAAGCGAGCCTTGA
TGAAATTGCATCTGTTCCTGGCATTTCTCAATCTCTTGCAGAAAAAATTTTTGAAACAATGCGAGGGGATTAA

Domains

Predicted by InterProScan.

GIY-YIG catalytic domain (GIY-YIG)

(17-91)

UvrB/uvrC motif (UVR)

(203-236)

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(384-541)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Streptococcus pneumoniae TIGR4

37.937

98.525

0.374
  uvrC Streptococcus pneumoniae R6

37.604

98.525

0.37
  uvrC Streptococcus pneumoniae D39

37.604

98.525

0.37