Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   ACIO07_RS05365 Genome accession   NZ_CP173228
Coordinates   1034260..1035510 (+) Length   416 a.a.
NCBI ID   WP_410683315.1    Uniprot ID   -
Organism   Avibacterium paragallinarum strain npAP/GA-USA/20231220/S2-3     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1029260..1040510
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIO07_RS05340 (ACIO07_05345) - 1030324..1030674 (+) 351 WP_035685595.1 DUF305 domain-containing protein -
  ACIO07_RS05345 (ACIO07_05350) - 1030834..1031190 (+) 357 Protein_1025 DNA-processing protein DprA -
  ACIO07_RS05350 (ACIO07_05355) - 1031194..1031744 (-) 551 Protein_1026 BCCT family transporter -
  ACIO07_RS05355 (ACIO07_05360) tig 1032250..1033548 (+) 1299 WP_410683314.1 trigger factor -
  ACIO07_RS05360 (ACIO07_05365) clpP 1033666..1034256 (+) 591 WP_017806897.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  ACIO07_RS05365 (ACIO07_05370) clpX 1034260..1035510 (+) 1251 WP_410683315.1 ATP-dependent protease ATP-binding subunit ClpX Regulator
  ACIO07_RS05370 (ACIO07_05375) aspA 1035733..1037160 (+) 1428 WP_110479872.1 aspartate ammonia-lyase -
  ACIO07_RS05375 (ACIO07_05380) - 1037251..1039047 (-) 1797 WP_410683316.1 AMP-dependent synthetase/ligase -
  ACIO07_RS05380 (ACIO07_05385) rimI 1039208..1039651 (-) 444 WP_264245499.1 ribosomal protein S18-alanine N-acetyltransferase -
  ACIO07_RS05385 (ACIO07_05390) - 1039653..1040063 (-) 411 WP_026138449.1 DNA polymerase III subunit psi -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45721.39 Da        Isoelectric Point: 4.8036

>NTDB_id=957400 ACIO07_RS05365 WP_410683315.1 1034260..1035510(+) (clpX) [Avibacterium paragallinarum strain npAP/GA-USA/20231220/S2-3]
MTTEQQLHCSICGKERSEVKKLIAGEDGAICNECIELCHNLLVEAEQQANENPQENASQSEKAELPTPHQIRAHLDDYVI
GQDYAKKVLAVAVYNHYKRQQAGYKADDVELGKSNILLIGPTGSGKTLLAETLARMLNVPFAMADATTLTEAGYVGEDVE
NVLQKLLQNCDYDVEKAEKGIIYIDEIDKITRKSENPSITRDVSGEGVQQALLKLVEGTIASIPPQGGRKHPQQEMLRLD
TSKILFICGGAFAGLDKIIEKRVHVGSGIGFGAEVKGESDKATLTELFAQVEPDDLMKFGLIPEFIGRLPVIAPLAELDE
EALIQILTEPKNALTKQYQVLFNLENVKLEFTHAALVAMAKQALERKTGARGLRSIVEGLLLDTMYDLPSLKNVEKVIIE
ESTVTKNQAPQIIYKS

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=957400 ACIO07_RS05365 WP_410683315.1 1034260..1035510(+) (clpX) [Avibacterium paragallinarum strain npAP/GA-USA/20231220/S2-3]
ATGACAACAGAACAACAACTCCATTGTTCCATCTGCGGCAAAGAACGCAGCGAAGTCAAAAAATTGATCGCGGGTGAAGA
TGGGGCGATTTGTAATGAATGTATCGAACTTTGCCACAATTTATTGGTTGAGGCAGAGCAACAAGCAAACGAAAACCCGC
AAGAAAACGCCTCACAATCTGAAAAGGCAGAATTACCTACGCCTCATCAAATTCGCGCGCATTTAGATGATTATGTTATT
GGGCAAGACTACGCCAAAAAAGTGCTTGCCGTTGCGGTGTATAATCATTACAAACGCCAACAGGCGGGCTATAAGGCTGA
CGATGTGGAACTAGGTAAAAGTAATATTTTGCTCATTGGTCCAACGGGAAGCGGAAAAACCCTATTGGCAGAAACCCTAG
CCAGAATGCTGAATGTGCCTTTTGCAATGGCTGATGCAACCACACTCACCGAAGCGGGTTATGTTGGTGAAGATGTAGAA
AATGTACTACAAAAACTTTTGCAAAATTGCGATTATGACGTGGAAAAAGCAGAAAAAGGCATTATTTACATTGATGAAAT
TGACAAAATTACGCGGAAATCAGAGAACCCATCTATTACCCGTGATGTATCAGGCGAGGGTGTTCAGCAAGCCTTACTTA
AATTAGTAGAGGGAACCATTGCGTCAATCCCACCACAAGGTGGACGCAAACACCCACAACAAGAGATGTTACGCCTTGAT
ACATCAAAAATTCTCTTTATCTGCGGCGGGGCTTTCGCGGGGTTAGATAAAATCATTGAAAAACGCGTACATGTAGGTAG
TGGTATCGGCTTTGGAGCAGAAGTGAAAGGAGAATCAGATAAAGCTACCTTGACGGAACTATTTGCCCAAGTTGAACCTG
ATGATTTAATGAAATTTGGTTTAATCCCTGAATTTATCGGGCGTTTACCCGTGATAGCACCATTAGCCGAGCTTGATGAA
GAAGCCTTAATCCAAATTCTGACCGAACCGAAAAATGCACTTACTAAGCAATATCAAGTGCTATTCAACCTTGAAAATGT
GAAGTTAGAATTTACCCACGCTGCCCTCGTGGCAATGGCAAAACAGGCTTTGGAAAGAAAAACGGGGGCGAGGGGATTGC
GTTCCATCGTAGAGGGATTGTTGCTTGATACGATGTACGATCTTCCTTCATTGAAAAATGTCGAGAAGGTAATCATTGAA
GAGAGTACGGTAACAAAAAACCAAGCTCCACAGATAATATATAAATCGTAA

Domains

Predicted by InterProScan.

AAA domain (Cdc48 subfamily) (AAA_2)

(113-312)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(318-395)

ClpX C4-type zinc finger (zf-C4_ClpX)

(7-43)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

57.664

98.798

0.57
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

54.878

98.558

0.541