Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   ACIO07_RS00635 Genome accession   NZ_CP173228
Coordinates   129073..129840 (-) Length   255 a.a.
NCBI ID   WP_410682581.1    Uniprot ID   -
Organism   Avibacterium paragallinarum strain npAP/GA-USA/20231220/S2-3     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 124073..134840
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIO07_RS00610 (ACIO07_00610) aroB 124462..125550 (-) 1089 WP_410682575.1 3-dehydroquinate synthase -
  ACIO07_RS00615 (ACIO07_00615) aroK 125567..126127 (-) 561 WP_272487554.1 shikimate kinase AroK -
  ACIO07_RS00620 (ACIO07_00620) comE 126328..127650 (-) 1323 WP_410682577.1 type IV pilus secretin PilQ Machinery gene
  ACIO07_RS00625 (ACIO07_00625) - 127659..128018 (-) 360 WP_017806828.1 hypothetical protein -
  ACIO07_RS00630 (ACIO07_00630) - 128018..129046 (-) 1029 WP_410682579.1 PilN domain-containing protein -
  ACIO07_RS00635 (ACIO07_00635) comA 129073..129840 (-) 768 WP_410682581.1 hypothetical protein Machinery gene
  ACIO07_RS00640 (ACIO07_00640) - 129999..132548 (+) 2550 WP_410682583.1 penicillin-binding protein 1A -
  ACIO07_RS00645 (ACIO07_00645) - 132648..133604 (-) 957 WP_410682585.1 alpha-2,3-sialyltransferase -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 30335.13 Da        Isoelectric Point: 7.5004

>NTDB_id=957377 ACIO07_RS00635 WP_410682581.1 129073..129840(-) (comA) [Avibacterium paragallinarum strain npAP/GA-USA/20231220/S2-3]
MLKRKISCKKQLQIGIWKGIRTCDFVWFDEENSPRFCVIENDISFERLKPNLLVGGCNYSLKTLKFVASITSQYTWIKTL
LLPHSLTISEYEQQCRFLLSQELPIIIDDIWFDYQVEQLKEGVKLTVYAVKKKIAEDYLKIYQPLSIQVLDCISNTVIRA
FHYFIDYKIEKKSLFFYQDEVYVFIINPNTNQIQTIHKTKISLTTLYEKFCQRYSFDCDQVYYYSSLNNTQEYSPDWIRI
DTDIPFIALGNALWK

Nucleotide


Download         Length: 768 bp        

>NTDB_id=957377 ACIO07_RS00635 WP_410682581.1 129073..129840(-) (comA) [Avibacterium paragallinarum strain npAP/GA-USA/20231220/S2-3]
ATGTTAAAAAGAAAAATTTCTTGTAAGAAACAGCTGCAAATTGGTATCTGGAAAGGTATCAGAACTTGTGATTTTGTCTG
GTTTGATGAGGAAAATAGTCCTCGCTTTTGTGTAATTGAGAATGATATTTCGTTTGAGCGTTTGAAACCTAATTTGTTAG
TTGGTGGATGTAATTATTCATTAAAAACTTTGAAATTTGTGGCATCTATTACATCGCAATATACTTGGATAAAAACATTG
TTGCTTCCTCATTCTCTAACTATTTCTGAATATGAACAGCAATGCCGTTTCTTATTGTCTCAAGAATTACCTATTATTAT
CGATGATATTTGGTTTGATTATCAAGTAGAACAGCTAAAAGAAGGTGTTAAATTAACTGTGTATGCGGTTAAAAAAAAGA
TAGCCGAAGATTATCTTAAGATATATCAGCCTTTATCTATTCAAGTTTTAGATTGTATCTCAAATACTGTAATTAGAGCG
TTTCATTATTTTATTGATTATAAAATAGAGAAAAAATCACTGTTTTTTTATCAAGATGAAGTCTATGTATTTATTATTAA
TCCTAATACAAATCAAATCCAAACTATACATAAAACAAAGATTTCACTTACCACTTTGTATGAGAAATTTTGTCAACGCT
ATTCATTTGATTGTGATCAAGTTTATTATTATTCTTCGTTAAATAATACACAAGAATATTCTCCAGATTGGATTAGAATA
GATACAGATATTCCATTTATAGCATTAGGAAATGCATTATGGAAGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Haemophilus influenzae 86-028NP

39.442

98.431

0.388
  comA Haemophilus influenzae Rd KW20

39.442

98.431

0.388