Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   ACIVJH_RS08280 Genome accession   NZ_CP173226
Coordinates   1548689..1549933 (-) Length   414 a.a.
NCBI ID   WP_003688869.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain NCTC 8375 [B 5025]     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1543689..1554933
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIVJH_RS08255 - 1543893..1545281 (+) 1389 WP_003693004.1 DEAD/DEAH box helicase -
  ACIVJH_RS08260 - 1545632..1545832 (-) 201 WP_003693002.1 hypothetical protein -
  ACIVJH_RS08265 - 1545846..1546400 (-) 555 WP_003688863.1 hypothetical protein -
  ACIVJH_RS08270 - 1546485..1546985 (-) 501 WP_010357954.1 hypothetical protein -
  ACIVJH_RS08275 - 1547389..1548582 (+) 1194 WP_003688867.1 aspartate aminotransferase family protein -
  ACIVJH_RS08280 clpX 1548689..1549933 (-) 1245 WP_003688869.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  ACIVJH_RS08285 rbfA 1550116..1550487 (+) 372 WP_003688871.1 30S ribosome-binding factor RbfA -
  ACIVJH_RS08290 - 1550498..1551022 (+) 525 WP_003688872.1 hypothetical protein -
  ACIVJH_RS08295 truB 1551080..1552000 (+) 921 WP_003688873.1 tRNA pseudouridine(55) synthase TruB -
  ACIVJH_RS08300 - 1552217..1552441 (+) 225 Protein_1611 site-specific DNA-methyltransferase -
  ACIVJH_RS08305 - 1552687..1552785 (+) 99 Protein_1612 hypothetical protein -
  ACIVJH_RS08310 - 1552886..1554463 (+) 1578 WP_404376858.1 site-specific DNA-methyltransferase -

Sequence

Protein


Download         Length: 414 a.a.        Molecular weight: 44833.21 Da        Isoelectric Point: 4.8622

>NTDB_id=957356 ACIVJH_RS08280 WP_003688869.1 1548689..1549933(-) (clpX) [Neisseria gonorrhoeae strain NCTC 8375 [B 5025]]
MSNENRTCSFCGKSKSHVKHLIEGENAFICDECVSNCLEILYEGDNGGTPPENAGGEPEESGKLPTPAEIVANLDDYVIG
QGQAKKALAVAVYNHYKRLRHPKADGGVELSKSNILLIGPTGSGKTLLAQSLARKLDVPFVMADATTLTEAGYVGEDVEQ
IITKLLGKCDFDVEKAQHGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPNQEFINVDT
ANILFICGGAFAGLEKVIRQRTEKGGIGFGASVHSKDENAGITKLFGIVEPEDLIKFGLIPELIGRLPVIATLEELDEDA
LINILTEPKNALVKQYQALFGIENVGLEFEEGALRSIARQAMERKTGARGLRSIVERCLLDTMYRLPDLQGLKKVVVGKA
VIEEGREPELVFES

Nucleotide


Download         Length: 1245 bp        

>NTDB_id=957356 ACIVJH_RS08280 WP_003688869.1 1548689..1549933(-) (clpX) [Neisseria gonorrhoeae strain NCTC 8375 [B 5025]]
ATGTCCAACGAAAACCGTACCTGTTCCTTTTGCGGAAAATCCAAATCACACGTCAAACATTTGATTGAGGGCGAAAACGC
CTTTATCTGCGACGAATGCGTCTCAAACTGCCTCGAAATATTGTACGAAGGCGACAACGGCGGCACGCCTCCGGAAAATG
CCGGAGGGGAGCCGGAAGAATCCGGCAAACTGCCCACGCCCGCCGAAATCGTTGCCAACCTCGACGATTATGTCATCGGG
CAGGGGCAGGCGAAAAAGGCGCTGGCGGTTGCGGTTTACAACCATTACAAACGCCTGCGCCACCCGAAAGCCGACGGCGG
TGTCGAATTGTCGAAATCCAACATCCTGCTTATCGGCCCGACCGGATCGGGTAAAACGCTGTTGGCGCAATCTTTGGCAC
GCAAACTGGACGTGCCGTTCGTGATGGCGGATGCGACCACGCTGACCGAAGCCGGCTATGTCGGCGAAGATGTCGAACAA
ATCATTACCAAACTGTTGGGCAAATGCGATTTCGATGTCGAAAAAGCCCAGCACGGCATTGTCTATATTGACGAAATTGA
CAAAATTTCGCGTAAAAGCGACAACCCGTCCATCACGCGCGACGTGTCCGGCGAAGGCGTGCAGCAAGCCTTGCTGAAAC
TGATTGAAGGTACGGTGGCAAGCGTTCCGCCCCAAGGCGGACGCAAGCATCCGAATCAGGAATTTATCAACGTTGATACC
GCCAACATCCTGTTTATCTGCGGCGGCGCGTTTGCAGGCTTGGAAAAAGTGATTCGCCAGCGCACCGAGAAAGGTGGTAT
CGGTTTCGGCGCGTCCGTTCACAGCAAGGACGAAAATGCCGGCATTACCAAGCTGTTCGGCATCGTCGAACCGGAAGATT
TAATCAAATTCGGCCTGATTCCGGAATTAATCGGACGTTTGCCCGTGATTGCAACTTTAGAAGAACTGGATGAGGACGCG
CTGATTAATATTTTAACCGAGCCGAAAAACGCTTTGGTCAAGCAGTATCAAGCCTTGTTCGGCATAGAAAACGTCGGGTT
GGAATTTGAAGAAGGCGCATTGCGTTCCATCGCGCGGCAGGCAATGGAACGCAAAACCGGCGCGCGCGGCCTGCGTTCCA
TCGTCGAACGCTGCCTGCTCGATACGATGTACCGCCTGCCCGATTTGCAAGGCTTGAAAAAAGTGGTGGTCGGCAAGGCA
GTCATCGAAGAGGGCAGGGAACCGGAATTGGTGTTCGAGTCCTGA

Domains

Predicted by InterProScan.

AAA domain (Cdc48 subfamily) (AAA_2)

(112-310)

ClpX C4-type zinc finger (zf-C4_ClpX)

(7-42)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(316-387)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

56.28

100

0.563
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

55.448

99.758

0.553