Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   ACIQTD_RS00415 Genome accession   NZ_CP173185
Coordinates   77152..77937 (-) Length   261 a.a.
NCBI ID   WP_058202931.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain MGEL24009     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 72152..82937
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIQTD_RS00390 - 73565..73867 (-) 303 WP_003132256.1 hypothetical protein -
  ACIQTD_RS00395 - 73869..74036 (-) 168 WP_270250892.1 lactococcin family bacteriocin -
  ACIQTD_RS00400 rpmG 74603..74752 (-) 150 WP_003132258.1 50S ribosomal protein L33 -
  ACIQTD_RS00405 rpmF 74782..74955 (-) 174 WP_010905107.1 50S ribosomal protein L32 -
  ACIQTD_RS00410 - 75319..77100 (+) 1782 WP_320719338.1 heavy metal translocating P-type ATPase -
  ACIQTD_RS00415 spo0J 77152..77937 (-) 786 WP_058202931.1 ParB/RepB/Spo0J family partition protein Regulator
  ACIQTD_RS00420 rarA 77993..79252 (-) 1260 WP_270250869.1 replication-associated recombination protein A Machinery gene
  ACIQTD_RS00425 - 79296..79784 (-) 489 WP_270250867.1 GNAT family N-acetyltransferase -
  ACIQTD_RS00430 - 79936..80403 (+) 468 WP_010905112.1 DUF3013 family protein -
  ACIQTD_RS00435 - 80433..81986 (+) 1554 WP_038598438.1 ABC-F family ATP-binding cassette domain-containing protein -
  ACIQTD_RS00440 - 82117..82401 (+) 285 WP_010905114.1 hypothetical protein -
  ACIQTD_RS00445 - 82439..82927 (+) 489 WP_404399239.1 YdeI/OmpD-associated family protein -

Sequence

Protein


Download         Length: 261 a.a.        Molecular weight: 29822.72 Da        Isoelectric Point: 9.7193

>NTDB_id=956986 ACIQTD_RS00415 WP_058202931.1 77152..77937(-) (spo0J) [Lactococcus lactis subsp. lactis strain MGEL24009]
MVEQITQLKLSTIVKNPYQPRLVFDEDKLKELANSIQENGVLQPIIVRKSKLVGYELLAGERRFQASKLAGLETIPAIIR
SYSDEEMMTLSILENLQRENLNPLEESKSLAQLADKLGMTHDQIAKALGKSRSYVSNLIRLLGLPDTILKHVENREISPA
HARTLLAEKNPKKQLELVDKIIKEQLNVRALEAIIYGEEKFTDKSVSKLNINLFTDETEKELMKKLGNRVKIQANKKYQG
NLSIRFDNLDELEHLIKLLKK

Nucleotide


Download         Length: 786 bp        

>NTDB_id=956986 ACIQTD_RS00415 WP_058202931.1 77152..77937(-) (spo0J) [Lactococcus lactis subsp. lactis strain MGEL24009]
ATGGTAGAACAAATCACTCAACTTAAGTTGTCAACAATTGTAAAAAACCCTTACCAGCCTCGTCTTGTTTTTGATGAGGA
TAAATTAAAAGAATTGGCTAATTCTATCCAAGAAAATGGCGTTTTACAACCCATAATCGTTCGTAAATCAAAACTTGTTG
GCTATGAGCTTTTAGCAGGTGAACGTCGGTTTCAAGCTTCAAAATTAGCTGGTTTAGAAACTATACCAGCAATTATTAGA
AGCTATTCTGATGAAGAAATGATGACTCTCTCAATTTTAGAAAATTTGCAGAGAGAAAATCTCAATCCACTAGAAGAGTC
CAAAAGTTTGGCACAACTGGCTGACAAATTGGGAATGACCCACGATCAAATCGCTAAGGCCCTTGGAAAATCAAGGTCTT
ATGTCTCTAATCTTATTCGTTTACTTGGTTTGCCTGACACAATTTTGAAGCATGTTGAAAATCGAGAGATTTCACCTGCT
CACGCTAGAACACTTTTAGCTGAAAAAAATCCTAAAAAGCAATTAGAGCTCGTTGATAAAATAATTAAAGAGCAGCTCAA
TGTCAGAGCACTTGAAGCTATTATTTATGGTGAAGAAAAATTTACTGACAAATCTGTCAGTAAATTAAATATCAATCTTT
TTACTGACGAAACTGAAAAAGAACTGATGAAAAAATTGGGAAATAGGGTTAAGATTCAAGCAAATAAAAAATATCAAGGG
AATTTATCCATTCGCTTTGATAATCTTGATGAACTAGAACATCTAATAAAATTACTAAAAAAATAA

Domains

Predicted by InterProScan.

ParB/Sulfiredoxin domain (ParB_N)

(7-95)

HTH domain found in ParB protein (HTH_ParB)

(147-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

48.047

98.084

0.471