Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   ACIQTD_RS00420 Genome accession   NZ_CP173185
Coordinates   77993..79252 (-) Length   419 a.a.
NCBI ID   WP_270250869.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain MGEL24009     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 72993..84252
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIQTD_RS00390 - 73565..73867 (-) 303 WP_003132256.1 hypothetical protein -
  ACIQTD_RS00395 - 73869..74036 (-) 168 WP_270250892.1 lactococcin family bacteriocin -
  ACIQTD_RS00400 rpmG 74603..74752 (-) 150 WP_003132258.1 50S ribosomal protein L33 -
  ACIQTD_RS00405 rpmF 74782..74955 (-) 174 WP_010905107.1 50S ribosomal protein L32 -
  ACIQTD_RS00410 - 75319..77100 (+) 1782 WP_320719338.1 heavy metal translocating P-type ATPase -
  ACIQTD_RS00415 spo0J 77152..77937 (-) 786 WP_058202931.1 ParB/RepB/Spo0J family partition protein Regulator
  ACIQTD_RS00420 rarA 77993..79252 (-) 1260 WP_270250869.1 replication-associated recombination protein A Machinery gene
  ACIQTD_RS00425 - 79296..79784 (-) 489 WP_270250867.1 GNAT family N-acetyltransferase -
  ACIQTD_RS00430 - 79936..80403 (+) 468 WP_010905112.1 DUF3013 family protein -
  ACIQTD_RS00435 - 80433..81986 (+) 1554 WP_038598438.1 ABC-F family ATP-binding cassette domain-containing protein -
  ACIQTD_RS00440 - 82117..82401 (+) 285 WP_010905114.1 hypothetical protein -
  ACIQTD_RS00445 - 82439..82927 (+) 489 WP_404399239.1 YdeI/OmpD-associated family protein -
  ACIQTD_RS00450 prmA 82945..83898 (+) 954 WP_270250865.1 50S ribosomal protein L11 methyltransferase -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 46791.18 Da        Isoelectric Point: 6.0610

>NTDB_id=956987 ACIQTD_RS00420 WP_270250869.1 77993..79252(-) (rarA) [Lactococcus lactis subsp. lactis strain MGEL24009]
MAQNLARRMRPRNIDEIVGQKHLVGKGKIIRRMVETQLLSSMILYGPPGIGKTSIASAIAGTMNVAFRTFNATTDTKKRL
QEIASEAEFSGQLVLLLDEIHRLDKPKQDFLLPLLENGQIILIGATTENPYFSVVPAIRSRVQIFELKPLEPEDLEFAVN
LSLQDKERGFDFGVTIDNDALYFLIHSTNGDLRSTFNALELAVLSSEEHHVTLDDMENSLQRKAATFDKEGDAHYDLLSA
LQKSIRGSDVNASLHYAARLIEGGDLQSLARRLTVMAYEDIGLANPDAALHTVTALSAAEKLGFPEARIPLANIIIDLAL
SPKSNAAYLAMDEAIADLGKYGNLAVPPHLQDGHYAGAKDLGRSVEYQYAHNFPNHWVNQQYLPDKIKNADYFRPDDMGR
YEKALHSRKEWIEEQKKRN

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=956987 ACIQTD_RS00420 WP_270250869.1 77993..79252(-) (rarA) [Lactococcus lactis subsp. lactis strain MGEL24009]
ATGGCACAAAATCTTGCAAGACGAATGAGACCACGAAATATTGATGAAATTGTTGGACAAAAACATTTAGTTGGTAAAGG
AAAAATCATTCGCCGAATGGTCGAAACTCAACTTCTTTCAAGTATGATTCTCTACGGACCTCCTGGCATTGGTAAAACTT
CAATTGCTTCAGCAATTGCTGGAACAATGAATGTCGCATTTCGGACATTTAATGCAACGACAGACACTAAAAAAAGACTT
CAAGAAATTGCCTCAGAAGCCGAATTTTCTGGTCAGCTTGTTTTATTACTTGATGAAATTCATCGCCTAGACAAACCTAA
ACAAGATTTTCTTTTACCACTTTTAGAAAATGGACAAATTATTTTAATTGGAGCAACAACCGAAAACCCTTATTTTTCAG
TTGTTCCAGCGATTCGTTCTCGCGTACAGATTTTTGAATTAAAACCTTTAGAACCAGAAGATTTAGAATTTGCTGTAAAC
CTAAGTTTACAAGATAAAGAACGTGGATTTGATTTTGGTGTGACCATTGACAATGATGCACTTTACTTTTTAATTCATTC
AACTAATGGGGATTTACGCTCTACTTTTAATGCCTTAGAATTAGCCGTTCTTTCCTCAGAAGAACATCATGTCACTTTAG
ATGATATGGAAAATTCTTTGCAAAGAAAAGCTGCAACTTTTGATAAAGAGGGCGATGCTCATTATGACTTGCTTTCTGCT
TTACAAAAGTCAATTCGTGGTTCTGATGTCAACGCAAGTTTACACTATGCGGCTCGTTTAATTGAGGGTGGAGATTTGCA
GAGTCTAGCCCGACGCTTAACCGTTATGGCTTATGAAGATATTGGTTTAGCAAATCCTGATGCCGCACTTCATACGGTTA
CAGCATTATCAGCAGCCGAAAAACTCGGTTTTCCTGAGGCACGGATTCCGCTTGCCAATATCATTATTGACTTGGCTTTA
TCCCCTAAATCAAACGCGGCTTATTTAGCGATGGATGAAGCCATTGCTGATTTAGGAAAATATGGAAATCTTGCTGTACC
ACCACACTTACAGGATGGCCATTACGCTGGGGCAAAAGATTTAGGAAGGTCTGTAGAATACCAATATGCTCATAATTTCC
CTAATCACTGGGTAAACCAACAGTACTTACCTGATAAAATTAAAAATGCTGATTATTTCCGTCCTGATGATATGGGAAGA
TATGAAAAAGCACTCCACAGTCGTAAAGAATGGATTGAGGAACAAAAAAAGAGGAACTGA

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(174-246)

MgsA AAA+ ATPase C terminal (MgsA_C)

(247-411)

ATPase family associated with various cellular activities (AAA) (AAA)

(42-145)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

59.902

97.613

0.585