Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptB   Type   Regulator
Locus tag   AABA14_RS02530 Genome accession   NZ_AP028607
Coordinates   483588..484637 (+) Length   349 a.a.
NCBI ID   WP_000653764.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain Sep2     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 478588..489637
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABA14_RS02505 (TKY123642_04810) - 480135..480410 (+) 276 WP_338168452.1 hypothetical protein -
  AABA14_RS02510 (TKY123642_04820) dnaJ 480615..481751 (+) 1137 WP_001066295.1 molecular chaperone DnaJ -
  AABA14_RS02515 (TKY123642_04830) - 482085..482372 (-) 288 WP_000777753.1 hypothetical protein -
  AABA14_RS02520 (TKY123642_04840) - 482382..482792 (-) 411 WP_001278304.1 HIT family protein -
  AABA14_RS02525 (TKY123642_04850) pptA 482860..483591 (+) 732 WP_000889923.1 ABC transporter ATP-binding protein Regulator
  AABA14_RS02530 (TKY123642_04860) pptB 483588..484637 (+) 1050 WP_000653764.1 ABC transporter permease Regulator
  AABA14_RS02535 (TKY123642_04870) - 484805..485134 (-) 330 WP_000132575.1 hypothetical protein -
  AABA14_RS02540 (TKY123642_04880) - 485409..485747 (+) 339 WP_000682121.1 LytTR family DNA-binding domain-containing protein -
  AABA14_RS02545 (TKY123642_04890) comE/blpR 485752..486489 (+) 738 WP_001219124.1 response regulator transcription factor Regulator
  AABA14_RS02550 (TKY123642_04900) - 486503..487843 (+) 1341 WP_061764627.1 sensor histidine kinase -
  AABA14_RS02555 (TKY123642_04910) blpC 487888..488043 (-) 156 WP_000358814.1 quorum-sensing system pheromone BlpC -
  AABA14_RS02560 (TKY123642_04920) - 488100..489461 (-) 1362 WP_061764626.1 bacteriocin secretion accessory protein -

Sequence


Protein


Download         Length: 349 a.a.        Molecular weight: 40560.69 Da        Isoelectric Point: 10.0008

>NTDB_id=95694 AABA14_RS02530 WP_000653764.1 483588..484637(+) (pptB) [Streptococcus pneumoniae strain Sep2]
MKDLFLKRKQAFRKECLGYLRYVLNDHFVLFLLVLLGFLAYQYSQLLQHFPENHWPILLFVGITSVLLLLWGGIATYMEA
PDKLFLLVGEEEIKLHLKRQTGISLVFWIFVQTLFLLLFAPLFLVMGYGLPVFLVYVLLLGVGKYFLFRQKASKFFTETG
LDWDYVISQESKRKQVLLRFFALFTQVKGISNSVKRRAYLDFILKAVQKVPGKIWQNLYLRSYLRNGDLFALSLRLLLLS
LLAQVFIEQAWIATAVVVLFNYLLLFQLLALYHAFDYQYLTQLFPLDKGQKEKGLQEVVRGLTSFVLLVELVVGLITFQE
KLALLALLGAGLVLLVLYLPYQVKRQMQD

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=95694 AABA14_RS02530 WP_000653764.1 483588..484637(+) (pptB) [Streptococcus pneumoniae strain Sep2]
ATGAAAGACTTGTTTTTAAAGAGAAAGCAGGCCTTTCGTAAGGAGTGTCTTGGTTATCTGCGCTATGTTCTCAATGACCA
CTTTGTCTTGTTCCTGCTTGTACTGTTGGGCTTTCTAGCCTACCAGTACAGTCAACTCTTACAACATTTTCCTGAAAATC
ATTGGCCTATCCTTTTGTTTGTAGGAATTACGTCTGTTTTACTTTTACTTTGGGGAGGAATTGCCACCTATATGGAGGCT
CCAGACAAGCTCTTTCTCTTAGTTGGAGAAGAGGAAATCAAGCTCCATCTCAAGCGTCAAACCGGCATTTCCCTAGTCTT
TTGGATTTTTGTCCAGACCCTCTTCTTGCTTTTATTTGCGCCCTTGTTTTTAGTCATGGGTTATGGCTTGCCTGTTTTTC
TGGTCTATGTGCTTTTATTGGGGGTAGGAAAATATTTTCTCTTTCGTCAAAAGGCCAGCAAATTTTTCACTGAAACTGGA
CTGGATTGGGACTATGTCATTTCCCAAGAAAGCAAGCGTAAGCAAGTCTTGCTTCGTTTCTTTGCCCTCTTTACGCAGGT
CAAGGGAATTTCAAACAGCGTTAAACGTCGTGCCTATCTGGACTTTATTTTAAAGGCTGTTCAGAAGGTGCCTGGGAAGA
TTTGGCAAAATCTCTATCTGCGTTCTTATCTGCGAAATGGCGACCTCTTTGCTCTCAGTCTTCGTCTTCTCTTGCTTTCC
TTGCTGGCGCAGGTTTTTATCGAGCAAGCTTGGATTGCGACAGCAGTGGTAGTTCTCTTTAACTACCTCTTGCTCTTCCA
GTTGCTGGCCCTCTATCATGCCTTTGACTACCAGTATTTGACCCAACTCTTTCCGCTGGACAAGGGGCAAAAGGAAAAAG
GCTTACAGGAGGTAGTTCGAGGATTGACCAGTTTTGTTTTACTTGTGGAATTAGTTGTTGGGTTGATTACCTTCCAAGAA
AAACTAGCCCTTCTAGCCTTACTAGGAGCTGGTTTGGTTTTACTAGTCTTGTATTTGCCTTATCAGGTAAAACGTCAGAT
GCAGGACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus salivarius strain HSISS4

47.714

100

0.479

  pptB Streptococcus thermophilus LMD-9

46.857

100

0.47


Multiple sequence alignment