Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   AM10699_RS11415 Genome accession   NZ_AP026075
Coordinates   2570740..2572212 (-) Length   490 a.a.
NCBI ID   WP_261891445.1    Uniprot ID   -
Organism   Acaryochloris marina MBIC10699     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2565740..2577212
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AM10699_RS11390 (AM10699_22630) - 2566066..2567886 (+) 1821 WP_261891441.1 mechanosensitive ion channel family protein -
  AM10699_RS11395 (AM10699_22640) - 2568028..2568621 (+) 594 WP_261891442.1 hypothetical protein -
  AM10699_RS11400 (AM10699_22650) - 2568732..2569418 (-) 687 WP_261891443.1 formylglycine-generating enzyme family protein -
  AM10699_RS11405 (AM10699_22660) - 2569557..2570273 (-) 717 WP_261891444.1 DNA alkylation repair protein -
  AM10699_RS11410 (AM10699_22670) - 2570263..2570553 (-) 291 WP_012165827.1 DUF4090 family protein -
  AM10699_RS11415 (AM10699_22680) radA 2570740..2572212 (-) 1473 WP_261891445.1 DNA repair protein RadA Machinery gene
  AM10699_RS11420 (AM10699_22690) rpaB 2572371..2573102 (+) 732 WP_010477475.1 response regulator transcription factor RpaB -
  AM10699_RS11425 (AM10699_22700) - 2573180..2573962 (-) 783 WP_012165829.1 TetR/AcrR family transcriptional regulator -
  AM10699_RS11430 (AM10699_22710) - 2574012..2575016 (+) 1005 WP_012165830.1 Rieske 2Fe-2S domain-containing protein -

Sequence

Protein


Download         Length: 490 a.a.        Molecular weight: 52681.52 Da        Isoelectric Point: 7.6803

>NTDB_id=95689 AM10699_RS11415 WP_261891445.1 2570740..2572212(-) (radA) [Acaryochloris marina MBIC10699]
MAKIRTHYICQECGAASPQFFGKCPSCHTWNSLVEQVVPNTPAATDGTRLAQRHRQRQNTSPKALSSLTLTQISEQPIQR
FSSGYSELDRVLGGGIVPGSLVLVGGDPGIGKSTLLLQIVNFLSARQTVLYVCAEESGQQVKLRAQRLGIGTLNLNKEIT
DPPPKSKDKSANADLYLLPETDLEMVLQELDSLQPQVAIIDSIQALFFSTLTSAPGSVAQVRECTSALMRLAKRNHITLF
IVGHVTKEGAIAGPKVLEHLVDTVLYFEGDRFANHRLLRSVKNRFGATHEVGVFEMIDRGLREVLNPSELFLGDREEVSP
GTATIVACEGTRPIVVELQALVSPTSYSSPRRSTTGIEYNRLLQILAVLEKRLGIPLSKLDAYVASSGGLSVAEPAADLG
VAIALAASFRDRLVDPTTVVIGEVGLGGQVRSVSQTELRLKEALKLGFKRAIIPKGQSFPSLDIEVIPVARVADAIVAAL
PGGSSAHSTE

Nucleotide


Download         Length: 1473 bp        

>NTDB_id=95689 AM10699_RS11415 WP_261891445.1 2570740..2572212(-) (radA) [Acaryochloris marina MBIC10699]
ATGGCAAAAATACGAACTCATTACATTTGCCAAGAATGTGGTGCAGCTTCTCCTCAGTTTTTTGGTAAATGTCCCTCCTG
TCACACTTGGAATTCTTTGGTCGAACAAGTGGTGCCAAATACACCGGCGGCAACCGACGGAACCCGCTTGGCACAACGAC
ATCGCCAACGTCAAAACACTTCACCCAAGGCACTTTCCTCCCTGACTTTGACCCAAATCTCTGAGCAGCCAATTCAGCGG
TTTAGTTCGGGTTATAGTGAACTCGATCGGGTATTGGGGGGCGGTATTGTTCCTGGTTCCCTGGTGTTAGTGGGCGGTGA
TCCAGGAATTGGTAAATCGACTCTTTTGTTGCAAATTGTCAACTTTTTAAGTGCCCGACAAACGGTTCTCTATGTTTGTG
CAGAAGAATCTGGCCAGCAGGTTAAATTGCGTGCCCAGCGATTGGGAATTGGAACCTTAAATTTAAATAAAGAAATCACG
GATCCACCTCCCAAATCAAAAGATAAATCCGCGAATGCCGATTTATACCTGTTGCCGGAAACAGATTTAGAAATGGTGTT
GCAAGAACTAGATTCCCTGCAACCCCAAGTGGCCATTATTGATAGTATTCAAGCCCTATTTTTCTCCACTTTAACGTCGG
CTCCTGGCTCCGTTGCCCAGGTGAGAGAATGTACGTCAGCCCTGATGCGCTTGGCGAAACGGAACCACATTACGCTGTTT
ATTGTTGGCCATGTGACAAAAGAAGGGGCGATCGCAGGTCCCAAGGTTTTAGAACATTTAGTGGATACGGTGCTCTATTT
TGAAGGCGATCGGTTTGCCAATCACCGATTACTCCGCTCTGTAAAAAATCGGTTTGGCGCAACTCATGAAGTCGGTGTGT
TCGAAATGATTGATCGAGGCCTGCGGGAAGTCTTGAATCCATCGGAGTTATTTTTGGGCGATCGCGAAGAGGTATCGCCA
GGGACTGCCACCATCGTCGCTTGTGAAGGCACCCGCCCCATTGTGGTGGAACTGCAGGCCTTGGTTAGCCCCACCAGCTA
TAGTTCGCCTCGCCGTTCAACCACGGGCATTGAATACAATCGGTTGCTGCAAATTCTAGCTGTGTTGGAGAAACGACTCG
GCATTCCCCTCTCGAAGCTAGATGCCTATGTGGCCTCTTCCGGCGGATTGAGTGTGGCTGAACCTGCAGCAGATTTAGGA
GTTGCGATCGCACTGGCAGCCAGCTTCCGTGATCGCCTGGTAGACCCAACCACCGTAGTGATTGGCGAAGTGGGATTGGG
GGGTCAAGTCCGCTCCGTATCGCAAACCGAACTACGGCTAAAAGAAGCCCTGAAACTGGGATTTAAACGGGCCATCATTC
CCAAAGGCCAGTCTTTTCCCAGTCTGGATATAGAAGTCATCCCCGTCGCTCGGGTCGCTGATGCCATTGTGGCCGCCCTG
CCGGGAGGATCATCGGCTCATTCGACTGAGTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(396-455)

KaiC (ATPase)

(83-284)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50.719

99.388

0.504
  radA Streptococcus pneumoniae Rx1

45.833

97.959

0.449
  radA Streptococcus pneumoniae D39

45.833

97.959

0.449
  radA Streptococcus pneumoniae R6

45.833

97.959

0.449
  radA Streptococcus pneumoniae TIGR4

45.833

97.959

0.449
  radA Streptococcus mitis SK321

45.72

97.755

0.447
  radA Streptococcus mitis NCTC 12261

45.72

97.755

0.447

Multiple sequence alignment