Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   AABA14_RS00455 Genome accession   NZ_AP028607
Coordinates   73657..74427 (+) Length   256 a.a.
NCBI ID   WP_000616164.1    Uniprot ID   Q97TA7
Organism   Streptococcus pneumoniae strain Sep2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 68657..79427
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABA14_RS00440 (TKY123642_00790) - 70659..71096 (+) 438 WP_000076479.1 CoA-binding protein -
  AABA14_RS00445 (TKY123642_00800) - 71332..72342 (-) 1011 WP_050150915.1 YeiH family protein -
  AABA14_RS00450 (TKY123642_00820) - 72491..73660 (+) 1170 WP_000366342.1 pyridoxal phosphate-dependent aminotransferase -
  AABA14_RS00455 (TKY123642_00830) recO 73657..74427 (+) 771 WP_000616164.1 DNA repair protein RecO Machinery gene
  AABA14_RS00460 (TKY123642_00840) plsX 74424..75416 (+) 993 WP_000717458.1 phosphate acyltransferase PlsX -
  AABA14_RS00465 (TKY123642_00850) - 75422..75655 (+) 234 WP_000136447.1 acyl carrier protein -
  AABA14_RS00470 (TKY123642_00860) - 75701..75991 (+) 291 Protein_86 IS5/IS1182 family transposase -
  AABA14_RS00475 (TKY123642_00870) blpU 76194..76424 (+) 231 WP_001093075.1 bacteriocin-like peptide BlpU -
  AABA14_RS00480 - 76427..76552 (+) 126 WP_000346297.1 PncF family bacteriocin immunity protein -
  AABA14_RS00485 - 76963..77157 (+) 195 WP_000756776.1 hypothetical protein -
  AABA14_RS00490 (TKY123642_00880) comR 77178..78071 (+) 894 WP_000343888.1 XRE family transcriptional regulator Regulator
  AABA14_RS00495 (TKY123642_00890) - 78614..78910 (+) 297 WP_000837726.1 uberolysin/carnocyclin family circular bacteriocin -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29787.35 Da        Isoelectric Point: 5.8959

>NTDB_id=95674 AABA14_RS00455 WP_000616164.1 73657..74427(+) (recO) [Streptococcus pneumoniae strain Sep2]
MIQSITSQGLVLYNRNFREDDKLVKIFTEQVGKRMFFVKHAGQSKLAPVIQPLVLARFLLRINDDGLSYIEDYHEVMTFP
KINSDLFVMAYATYVAALADASLQDNQQDAPLFAFLQKTLELMEAGLDYQVLTNIFEIQILTRFGISLNFNECVFCHRVG
QAFDFSFKYGACLCPEHYHEDKRRCHLNPNIPYLLNQFQAIDFETLETISLKPGIKQELRQFMDQLYEEYVGIHLKSKKF
IDSLADWGQLLKEEKK

Nucleotide


Download         Length: 771 bp        

>NTDB_id=95674 AABA14_RS00455 WP_000616164.1 73657..74427(+) (recO) [Streptococcus pneumoniae strain Sep2]
ATGATTCAGTCTATCACGAGTCAAGGCTTGGTGCTTTACAATCGCAATTTTCGTGAGGATGACAAGCTCGTCAAAATTTT
TACAGAGCAGGTTGGCAAACGCATGTTTTTTGTCAAACACGCTGGTCAGTCTAAGCTGGCGCCTGTTATTCAGCCCTTGG
TGCTGGCACGATTTCTCTTGCGAATCAATGATGACGGACTCAGTTACATCGAAGACTATCATGAGGTCATGACTTTTCCC
AAGATTAATAGTGACCTCTTTGTCATGGCCTATGCGACCTATGTGGCAGCTCTTGCAGATGCTAGTTTGCAGGACAATCA
GCAGGATGCTCCCTTGTTTGCTTTTTTGCAAAAGACTTTGGAGTTGATGGAAGCAGGCTTGGATTATCAGGTTTTGACCA
ATATTTTTGAAATTCAAATTTTGACTCGATTTGGAATCAGCCTCAATTTTAATGAGTGTGTCTTCTGCCATCGGGTTGGT
CAGGCTTTTGACTTTTCTTTCAAATATGGAGCCTGCCTCTGTCCAGAGCATTATCATGAGGATAAGAGACGTTGTCATCT
CAATCCCAATATCCCCTATCTGCTCAATCAATTTCAAGCTATTGATTTTGAGACTTTGGAGACCATTTCGCTCAAGCCTG
GAATCAAGCAAGAGCTACGCCAATTTATGGATCAATTATATGAAGAGTACGTTGGGATTCACCTAAAATCAAAGAAATTT
ATTGATTCCCTAGCAGACTGGGGACAATTACTAAAAGAGGAAAAGAAATGA

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(84-238)

Recombination protein O N terminal (RecO_N)

(4-72)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q97TA7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

99.219

100

0.992

Multiple sequence alignment