Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX   Type   Regulator
Locus tag   LLI816_RS10765 Genome accession   NZ_CP149095
Coordinates   2122787..2123278 (-) Length   163 a.a.
NCBI ID   WP_063283513.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain I8-16     
Function   activation of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2117787..2128278
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLI816_RS10765 (LLI816_10760) comX 2122787..2123278 (-) 492 WP_063283513.1 hypothetical protein Regulator
  LLI816_RS10770 (LLI816_10765) ezrA 2123537..2125267 (-) 1731 WP_003132670.1 septation ring formation regulator EzrA -
  LLI816_RS10775 (LLI816_10770) tsf 2125453..2126481 (-) 1029 WP_010906339.1 translation elongation factor Ts -
  LLI816_RS10780 (LLI816_10775) rpsB 2126603..2127370 (-) 768 WP_010906340.1 30S ribosomal protein S2 -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 19827.67 Da        Isoelectric Point: 5.8471

>NTDB_id=956633 LLI816_RS10765 WP_063283513.1 2122787..2123278(-) (comX) [Lactococcus lactis subsp. lactis strain I8-16]
MTYYLEEEDFENLFSEMKPIVMKLMKQIRIRTWKIEDYLQEGMIILHLLLEEQNDGHKLHTKFKVKYHQRLIDELRRSYA
KKRSHDHFIGLDVYECSDWINSGDTSPDNEVVFNHLLAEVYEGLSAHYQDLLLRQMRGEELTRMQRYRLREKIKAILFSE
DEE

Nucleotide


Download         Length: 492 bp        

>NTDB_id=956633 LLI816_RS10765 WP_063283513.1 2122787..2123278(-) (comX) [Lactococcus lactis subsp. lactis strain I8-16]
ATGACATATTACTTGGAAGAAGAGGATTTTGAAAATCTTTTTTCAGAAATGAAACCTATAGTTATGAAATTAATGAAACA
AATTCGCATTAGAACATGGAAAATAGAGGATTATCTTCAAGAGGGGATGATTATTTTACATCTTCTATTAGAAGAGCAGA
ACGATGGTCATAAGCTGCATACAAAATTTAAGGTAAAGTATCATCAAAGATTAATAGATGAATTAAGACGAAGTTATGCA
AAGAAACGAAGCCATGACCATTTTATAGGTTTAGATGTTTATGAATGCTCAGACTGGATAAATTCAGGTGATACTAGTCC
AGATAATGAAGTGGTCTTCAATCATTTGCTGGCAGAAGTATATGAAGGTTTGAGCGCACATTATCAAGACTTACTACTTC
GACAAATGCGAGGAGAAGAACTAACTCGCATGCAACGGTATCGCCTTCGTGAAAAAATAAAGGCCATCTTATTTTCAGAA
GACGAAGAGTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comX Lactococcus lactis subsp. lactis strain DGCC12653

98.16

100

0.982
  comX Lactococcus lactis subsp. cremoris KW2

76.074

100

0.761