Detailed information NTG0956558

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: WGR92_RS21910
• Genome accession: NZ_CP149000
• Coordinates: 4434899..4435699 (+)
• Length: 266 a.a.
• NCBI ID: WP_004145898.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain FUJ80050
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4429899..4440699

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
WGR92_RS21875 (WGR92_21825)	gspH	4430055..4430570 (+)	516	WP_004191951.1	type II secretion system minor pseudopilin GspH	-
WGR92_RS21880 (WGR92_21830)	gspI	4430567..4430932 (+)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
WGR92_RS21885 (WGR92_21835)	gspJ	4430929..4431525 (+)	597	WP_396273349.1	type II secretion system minor pseudopilin GspJ	-
WGR92_RS21890 (WGR92_21840)	gspK	4431522..4432508 (+)	987	WP_077260240.1	type II secretion system minor pseudopilin GspK	-
WGR92_RS21895 (WGR92_21845)	gspL	4432495..4433688 (+)	1194	WP_004191957.1	type II secretion system protein GspL	-
WGR92_RS21900 (WGR92_21850)	-	4433681..4434166 (+)	486	WP_025368434.1	type II secretion system protein M	-
WGR92_RS21905 (WGR92_21855)	-	4434156..4434902 (+)	747	WP_048988678.1	type II secretion system protein N	-
WGR92_RS21910 (WGR92_21860)	pilD	4434899..4435699 (+)	801	WP_004145898.1	A24 family peptidase	Machinery gene
WGR92_RS21915 (WGR92_21865)	hrpB	4435747..4438176 (-)	2430	WP_048988676.1	ATP-dependent helicase HrpB	-
WGR92_RS21920 (WGR92_21870)	thpR	4438249..4438785 (+)	537	WP_004145901.1	RNA 2',3'-cyclic phosphodiesterase	-
WGR92_RS21925 (WGR92_21875)	sfsA	4438785..4439501 (+)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
WGR92_RS21930 (WGR92_21880)	dksA	4439664..4440119 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29389.01 Da
• Isoelectric Point: 8.8894

>NTDB_id=956558 WGR92_RS21910 WP_004145898.1 4434899..4435699(+) (pilD) [Klebsiella pneumoniae strain FUJ80050]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=956558 WGR92_RS21910 WP_004145898.1 4434899..4435699(+) (pilD) [Klebsiella pneumoniae strain FUJ80050]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTGCTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGATCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTA
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGAGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTACTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425