Detailed information NTG0956453

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: WGR86_RS21515
• Genome accession: NZ_CP148983
• Coordinates: 4343205..4344005 (+)
• Length: 266 a.a.
• NCBI ID: WP_065804586.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain FUJ80025
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4338205..4349005

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
WGR86_RS21480 (WGR86_21445)	gspH	4338361..4338870 (+)	510	WP_038806668.1	type II secretion system minor pseudopilin GspH	-
WGR86_RS21485 (WGR86_21450)	gspI	4338873..4339238 (+)	366	WP_065804587.1	type II secretion system minor pseudopilin GspI	-
WGR86_RS21490 (WGR86_21455)	gspJ	4339235..4339831 (+)	597	WP_032411156.1	type II secretion system minor pseudopilin GspJ	-
WGR86_RS21495 (WGR86_21460)	gspK	4339828..4340814 (+)	987	WP_077254427.1	type II secretion system minor pseudopilin GspK	-
WGR86_RS21500 (WGR86_21465)	gspL	4340801..4341994 (+)	1194	WP_100908111.1	type II secretion system protein GspL	-
WGR86_RS21505 (WGR86_21470)	-	4341987..4342472 (+)	486	WP_004145896.1	type II secretion system protein M	-
WGR86_RS21510 (WGR86_21475)	-	4342462..4343208 (+)	747	WP_064152193.1	type II secretion system protein N	-
WGR86_RS21515 (WGR86_21480)	pilD	4343205..4344005 (+)	801	WP_065804586.1	A24 family peptidase	Machinery gene
WGR86_RS21520 (WGR86_21485)	hrpB	4344053..4346482 (-)	2430	WP_065804585.1	ATP-dependent helicase HrpB	-
WGR86_RS21525 (WGR86_21490)	thpR	4346555..4347091 (+)	537	WP_004177389.1	RNA 2',3'-cyclic phosphodiesterase	-
WGR86_RS21530 (WGR86_21495)	sfsA	4347091..4347807 (+)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
WGR86_RS21535 (WGR86_21500)	dksA	4347970..4348425 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29378.97 Da
• Isoelectric Point: 8.8894

>NTDB_id=956453 WGR86_RS21515 WP_065804586.1 4343205..4344005(+) (pilD) [Klebsiella pneumoniae strain FUJ80025]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLSLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=956453 WGR86_RS21515 WP_065804586.1 4343205..4344005(+) (pilD) [Klebsiella pneumoniae strain FUJ80025]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTACTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
TCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGTCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTACTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (123-231)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.057	99.624	0.489
pilD	Vibrio campbellii strain DS40M4	45.818	100	0.474
pilD	Acinetobacter nosocomialis M2	45.627	98.872	0.451
pilD	Acinetobacter baumannii D1279779	44.867	98.872	0.444
pilD	Neisseria gonorrhoeae MS11	42.912	98.12	0.421