Detailed information NTG0956333

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: WGR85_RS21920
• Genome accession: NZ_CP148951
• Coordinates: 4354050..4354850 (+)
• Length: 266 a.a.
• NCBI ID: WP_002888947.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain FUJ80036
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4349050..4359850

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
WGR85_RS21885 (WGR85_21840)	gspH	4349206..4349721 (+)	516	WP_032435598.1	type II secretion system minor pseudopilin GspH	-
WGR85_RS21890 (WGR85_21845)	gspI	4349718..4350083 (+)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
WGR85_RS21895 (WGR85_21850)	gspJ	4350080..4350676 (+)	597	WP_032435596.1	type II secretion system minor pseudopilin GspJ	-
WGR85_RS21900 (WGR85_21855)	gspK	4350673..4351659 (+)	987	WP_004183041.1	type II secretion system minor pseudopilin GspK	-
WGR85_RS21905 (WGR85_21860)	gspL	4351646..4352839 (+)	1194	WP_004191957.1	type II secretion system protein GspL	-
WGR85_RS21910 (WGR85_21865)	-	4352832..4353317 (+)	486	WP_004145896.1	type II secretion system protein M	-
WGR85_RS21915 (WGR85_21870)	-	4353307..4354053 (+)	747	WP_004145897.1	type II secretion system protein N	-
WGR85_RS21920 (WGR85_21875)	pilD	4354050..4354850 (+)	801	WP_002888947.1	A24 family peptidase	Machinery gene
WGR85_RS21925 (WGR85_21880)	hrpB	4354898..4357327 (-)	2430	WP_032435594.1	ATP-dependent helicase HrpB	-
WGR85_RS21930 (WGR85_21885)	thpR	4357400..4357936 (+)	537	WP_004177389.1	RNA 2',3'-cyclic phosphodiesterase	-
WGR85_RS21935 (WGR85_21890)	sfsA	4357936..4358652 (+)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
WGR85_RS21940 (WGR85_21895)	dksA	4358815..4359270 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29419.04 Da
• Isoelectric Point: 8.8894

>NTDB_id=956333 WGR85_RS21920 WP_002888947.1 4354050..4354850(+) (pilD) [Klebsiella pneumoniae strain FUJ80036]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGSIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=956333 WGR85_RS21920 WP_002888947.1 4354050..4354850(+) (pilD) [Klebsiella pneumoniae strain FUJ80036]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTACTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGGCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTAGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTACTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGAGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425